-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_740

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60682-T1
Couldn't classify 1637, 1821
Couldn't classify 4596, 4690
Sorry, prediction snap_scaffold_740-snap.1-T1 fails validation.
(AGT)	 AG	1637-1821	GT	GAG
(GGA)	 AG	2807-2989	GT	GTG
(AGA)	 AG	2995-3103	GT	AGG
(GGT)	 AG	3161-3254	GT	GGG
(GAT)	 AG	4596-4690	GT	GGG
-recovered snap_scaffold_740-snap.1-T1, internal, 1637, 1821
-recovered snap_scaffold_740-snap.1-T1, internal, 2807, 2989
-recovered snap_scaffold_740-snap.1-T1, internal, 2995, 3103
-recovered snap_scaffold_740-snap.1-T1, internal, 3161, 3254
-recovered snap_scaffold_740-snap.1-T1, internal, 4596, 4690
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4706
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support