-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_74

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 22197, 22327
Sorry, prediction snap_scaffold_74-snap.5-T1 fails validation.
(ATG)	 AC	20645-20658	GT	ACG
(GGT)	 AG	22044-22126	GT	AGG
(AGT)	 AG	22197-22327	GT	AGG
-recovered snap_scaffold_74-snap.5-T1, initial, 20645, 20658
-recovered snap_scaffold_74-snap.5-T1, internal, 22044, 22126
-recovered snap_scaffold_74-snap.5-T1, internal, 22197, 22327
Valid prediction for GlimmerHMM_glimmerT_59695-T1
Valid prediction for Augustus_model.g39558.t1
Valid prediction for GlimmerHMM_glimmerT_59697-T1
Valid prediction for Augustus_model.g39557.t1
Valid prediction for GlimmerHMM_glimmerT_59698-T1
Valid prediction for snap_scaffold_74-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_74-snap.4-T1
Valid prediction for snap_scaffold_74-snap.3-T1
Valid prediction for snap_scaffold_74-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_59699-T1
Valid prediction for snap_scaffold_74-snap.6-T1
Valid prediction for GlimmerHMM_glimmerT_59696-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10010, rend_intergenic: 7443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20616, rend_intergenic: 10429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22236, rend_intergenic: 20645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22327, rend_intergenic: 22259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 23640
-exon list size: 52


building trellis

1.9    
3.7    
5.6    
7.4    
9.3    
11.1    
13.0    
14.8    
16.7    
18.5    
20.4    
22.2    
24.1    
25.9    
27.8    
29.6    
31.5    
33.3    
35.2    
37.0    
38.9    
40.7    
42.6    
44.4    
46.3    
48.1    
50.0    
51.9    
53.7    
55.6    
57.4    
59.3    
61.1    
63.0    
64.8    
66.7    
68.5    
70.4    
72.2    
74.1    
75.9    
77.8    
79.6    
81.5    
83.3    
85.2    
87.0    
88.9    
90.7    
92.6    
94.4    
96.3    
98.1    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 10010, rend_intergenic: 7443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20616, rend_intergenic: 10429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22236, rend_intergenic: 20645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22327, rend_intergenic: 22259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support