-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_739

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60681-T1
Valid prediction for Augustus_model.g40169.t1
Valid prediction for GlimmerHMM_glimmerT_60680-T1
Valid prediction for snap_scaffold_739-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4617, 4646
Sorry, prediction Augustus_model.g40168.t1 fails validation.
(ATG)	 AT	2665-2829	GT	TGG
(ACG)	 AG	3306-3438	GT	TGG
(GTA)	 AG	4295-4371	GT	TGG
(GGG)	 AG	4617-4646	GT	GGG
-recovered Augustus_model.g40168.t1, initial, 2665, 2829
-recovered Augustus_model.g40168.t1, internal, 3306, 3438
-recovered Augustus_model.g40168.t1, internal, 4295, 4371
-recovered Augustus_model.g40168.t1, internal, 4617, 4646
Couldn't classify 4617, 4718
Sorry, prediction pasa_asmbl_51641.p1 fails validation.
(ATG)	 CA	2710-2829	GT	TGG
(GAA)	 AG	3098-3117	GT	AGG
(ACG)	 AG	3368-3438	GT	TGG
(GTA)	 AG	4295-4371	GT	TGG
(GGG)	 AG	4617-4718	TG	AGT
-recovered pasa_asmbl_51641.p1, initial, 2710, 2829
-recovered pasa_asmbl_51641.p1, internal, 3098, 3117
-recovered pasa_asmbl_51641.p1, internal, 3368, 3438
-recovered pasa_asmbl_51641.p1, internal, 4295, 4371
Couldn't classify 4295, 4371
Sorry, prediction snap_scaffold_739-snap.1-T1 fails validation.
(ATG)	 CA	2710-2829	GT	TGG
(ACG)	 AG	3306-3438	GT	TGG
(GTA)	 AG	4295-4371	GT	TGG
-recovered snap_scaffold_739-snap.1-T1, initial, 2710, 2829
-recovered snap_scaffold_739-snap.1-T1, internal, 3306, 3438
-recovered snap_scaffold_739-snap.1-T1, internal, 4295, 4371

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4720
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support