-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_736

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 334, 450
Sorry, prediction snap_scaffold_736-snap.1-T1 fails validation.
(GAT)	 AG	334-450	GT	AGG
(ATG)	 AG	765-911	GT	AGG
(GCA)	 AG	1452-1855	GT	ATG
(ACG)	 AG	3930-4020	CA	AGC
-recovered snap_scaffold_736-snap.1-T1, initial, 765, 911
-recovered snap_scaffold_736-snap.1-T1, terminal, 3930, 4020
-recovered snap_scaffold_736-snap.1-T1, internal, 334, 450
-recovered snap_scaffold_736-snap.1-T1, internal, 765, 911
-recovered snap_scaffold_736-snap.1-T1, internal, 1452, 1855
Valid prediction for Augustus_model.g40166.t1
Couldn't classify 334, 450
Sorry, prediction pasa_asmbl_51639.p1 fails validation.
(GAT)	 AG	334-450	GT	AGG
(ATG)	 AG	765-911	GT	AGG
(GCA)	 AG	1452-1880	AC	AGA
-recovered pasa_asmbl_51639.p1, initial, 765, 911
-recovered pasa_asmbl_51639.p1, terminal, 1452, 1880
-recovered pasa_asmbl_51639.p1, internal, 334, 450
-recovered pasa_asmbl_51639.p1, internal, 765, 911
Valid prediction for GlimmerHMM_glimmerT_60677-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60678-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60678-T1 235-386-terminal-1 is invalid.
Valid prediction for Augustus_model.g40167.t1
add_exon() Sorry, Augustus_model.g40167.t1 235-386-terminal-1 is invalid.
Couldn't classify 235, 362
Couldn't classify 3152, 3247
Sorry, prediction snap_scaffold_736-snap.2-T1 fails validation.
(CAT)	 AG	235-362	GT	GAG
(CGA)	 AG	2973-3049	GT	CGG
(CCC)	 AG	3152-3247	GT	TGG
-recovered snap_scaffold_736-snap.2-T1, internal, 235, 362
-recovered snap_scaffold_736-snap.2-T1, internal, 2973, 3049
-recovered snap_scaffold_736-snap.2-T1, internal, 3152, 3247

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4020, rend_intergenic: 1494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4740
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4020, rend_intergenic: 1494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support