-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_733

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4154, 4227
Sorry, prediction GlimmerHMM_glimmerT_60674-T1 fails validation.
(TTG)	 AG	4154-4227	GT	AGG
(ATC)	 AG	4411-4521	GT	AGG
-recovered GlimmerHMM_glimmerT_60674-T1, terminal, 4411, 4521
-recovered GlimmerHMM_glimmerT_60674-T1, internal, 4154, 4227
-recovered GlimmerHMM_glimmerT_60674-T1, internal, 4411, 4521
Couldn't classify 4411, 4517
Sorry, prediction Augustus_model.g40163.t1 fails validation.
(ATG)	 CC	2544-2619	GT	CGG
(TTG)	 AG	4154-4227	GT	AGG
(ATC)	 AG	4411-4517	GT	AAG
-recovered Augustus_model.g40163.t1, initial, 2544, 2619
-recovered Augustus_model.g40163.t1, internal, 4154, 4227
-recovered Augustus_model.g40163.t1, internal, 4411, 4517
Couldn't classify 1083, 1280
Couldn't classify 4411, 4517
Sorry, prediction snap_scaffold_733-snap.1-T1 fails validation.
(TCT)	 AG	1083-1280	GT	AGG
(TTG)	 AG	4154-4227	GT	AGG
(ATC)	 AG	4411-4517	GT	AAG
-recovered snap_scaffold_733-snap.1-T1, internal, 1083, 1280
-recovered snap_scaffold_733-snap.1-T1, internal, 4154, 4227
-recovered snap_scaffold_733-snap.1-T1, internal, 4411, 4517

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4750
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support