-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_732

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40162.t1
Couldn't classify 696, 765
Sorry, prediction pasa_asmbl_51633.p1 fails validation.
(GTG)	 GT	696-765	GT	ATG
(ATT)	 AG	907-1433	AG	AGA
-recovered pasa_asmbl_51633.p1, terminal, 907, 1433
Couldn't classify 706, 765
Sorry, prediction Augustus_model.g40161.t1 fails validation.
(TCT)	 AG	706-765	GT	ATG
(ATT)	 AG	907-1433	AG	AGA
-recovered Augustus_model.g40161.t1, terminal, 907, 1433
-recovered Augustus_model.g40161.t1, internal, 706, 765
Couldn't classify 706, 786
Sorry, prediction snap_scaffold_732-snap.1-T1 fails validation.
(TCT)	 AG	706-786	GT	AGG
(ATT)	 AG	907-1401	GT	TGG
(GGT)	 AG	2181-2293	GT	TGG
(AGA)	 AG	3671-4321	TA	AGT
-recovered snap_scaffold_732-snap.1-T1, terminal, 3671, 4321
-recovered snap_scaffold_732-snap.1-T1, internal, 706, 786
-recovered snap_scaffold_732-snap.1-T1, internal, 907, 1401
-recovered snap_scaffold_732-snap.1-T1, internal, 2181, 2293
Valid prediction for GlimmerHMM_glimmerT_60673-T1
Couldn't classify 3797, 4300
Sorry, prediction pasa_asmbl_51635.p1 fails validation.
(AGC)	 AC	3797-4300	GT	AGG

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60672-T1
Couldn't classify 3916, 3993
Sorry, prediction snap_scaffold_732-snap.2-T1 fails validation.
(ATG)	 TC	495-665	GT	AGG
(AGG)	 AG	739-870	GT	GAG
(AGC)	 AG	2506-2643	GT	GGG
(CTG)	 AG	2973-3077	GT	TAG
(CTT)	 AG	3332-3478	GT	AGG
(CTG)	 AG	3916-3993	GT	TGG
-recovered snap_scaffold_732-snap.2-T1, initial, 495, 665
-recovered snap_scaffold_732-snap.2-T1, internal, 739, 870
-recovered snap_scaffold_732-snap.2-T1, internal, 2506, 2643
-recovered snap_scaffold_732-snap.2-T1, internal, 2973, 3077
-recovered snap_scaffold_732-snap.2-T1, internal, 3332, 3478
-recovered snap_scaffold_732-snap.2-T1, internal, 3916, 3993

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4321, rend_intergenic: 763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4755
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4321, rend_intergenic: 763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support