-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_727

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 626, 691
Sorry, prediction snap_scaffold_727-snap.2-T1 fails validation.
(AGC)	 AG	626-691	GT	AGG
(TGA)	 AG	1527-1642	GT	GAG
(GTC)	 AG	4367-4483	GG	GAG
-recovered snap_scaffold_727-snap.2-T1, terminal, 4367, 4483
-recovered snap_scaffold_727-snap.2-T1, internal, 626, 691
-recovered snap_scaffold_727-snap.2-T1, internal, 1527, 1642

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 284, 443
Sorry, prediction GlimmerHMM_glimmerT_60667-T1 fails validation.
(GCT)	 AG	284-443	GT	GGG
(GTG)	 AG	2788-2869	GT	AGG
(ATC)	 AG	3118-3228	AC	AGA
-recovered GlimmerHMM_glimmerT_60667-T1, terminal, 3118, 3228
-recovered GlimmerHMM_glimmerT_60667-T1, internal, 284, 443
-recovered GlimmerHMM_glimmerT_60667-T1, internal, 2788, 2869
Couldn't classify 284, 443
Sorry, prediction Augustus_model.g40157.t1 fails validation.
(GCT)	 AG	284-443	GT	GGG
(GTG)	 AG	2788-2869	GT	AGG
(ATC)	 AG	3118-3228	AC	AGA
-recovered Augustus_model.g40157.t1, terminal, 3118, 3228
-recovered Augustus_model.g40157.t1, internal, 284, 443
-recovered Augustus_model.g40157.t1, internal, 2788, 2869
Couldn't classify 284, 443
Couldn't classify 4165, 4198
Sorry, prediction snap_scaffold_727-snap.1-T1 fails validation.
(GCT)	 AG	284-443	GT	GGG
(GTG)	 AG	2788-2869	GT	AGG
(ATC)	 AG	3118-3209	GT	AAG
(GTC)	 AG	4165-4198	GT	ACG
-recovered snap_scaffold_727-snap.1-T1, internal, 284, 443
-recovered snap_scaffold_727-snap.1-T1, internal, 2788, 2869
-recovered snap_scaffold_727-snap.1-T1, internal, 3118, 3209
-recovered snap_scaffold_727-snap.1-T1, internal, 4165, 4198

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4500, rend_intergenic: 626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4783
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4500, rend_intergenic: 626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support