-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_726

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60665-T1
Couldn't classify 650, 775
Couldn't classify 4470, 4769
Sorry, prediction snap_scaffold_726-snap.1-T1 fails validation.
(GCA)	 AG	650-775	GT	GTG
(TCC)	 AG	1724-1852	GT	CTG
(TTT)	 AG	2486-2760	GT	AAG
(ACA)	 AG	3771-3912	GT	AGG
(GTC)	 AG	4007-4090	GT	AGG
(GGA)	 AG	4470-4769	GT	CAG
-recovered snap_scaffold_726-snap.1-T1, internal, 650, 775
-recovered snap_scaffold_726-snap.1-T1, internal, 1724, 1852
-recovered snap_scaffold_726-snap.1-T1, internal, 2486, 2760
-recovered snap_scaffold_726-snap.1-T1, internal, 3771, 3912
-recovered snap_scaffold_726-snap.1-T1, internal, 4007, 4090
-recovered snap_scaffold_726-snap.1-T1, internal, 4470, 4769
Couldn't classify 190, 305
Couldn't classify 4470, 4641
Sorry, prediction Augustus_model.g40156.t1 fails validation.
(TGA)	 AG	190-305	GT	TGG
(GCA)	 AG	650-775	GT	GTG
(TCC)	 AG	1724-1826	GT	CTG
(TAC)	 AG	2112-2176	GT	AGG
(TTT)	 AG	2486-2760	GT	AAG
(ACA)	 AG	3771-3912	GT	AGG
(GTC)	 AG	4007-4090	GT	AGG
(GGA)	 AG	4470-4641	GT	GGG
-recovered Augustus_model.g40156.t1, internal, 190, 305
-recovered Augustus_model.g40156.t1, internal, 650, 775
-recovered Augustus_model.g40156.t1, internal, 1724, 1826
-recovered Augustus_model.g40156.t1, internal, 2112, 2176
-recovered Augustus_model.g40156.t1, internal, 2486, 2760
-recovered Augustus_model.g40156.t1, internal, 3771, 3912
-recovered Augustus_model.g40156.t1, internal, 4007, 4090
-recovered Augustus_model.g40156.t1, internal, 4470, 4641
Couldn't classify 190, 305
Sorry, prediction GlimmerHMM_glimmerT_60666-T1 fails validation.
(TGA)	 AG	190-305	GT	TGG
(GCA)	 AG	650-775	GT	GTG
(TCC)	 AG	1724-1826	GT	CTG
(TAC)	 AG	2112-2176	GT	AGG
(TTT)	 AG	2486-2764	GA	AGG
-recovered GlimmerHMM_glimmerT_60666-T1, terminal, 2486, 2764
-recovered GlimmerHMM_glimmerT_60666-T1, internal, 190, 305
-recovered GlimmerHMM_glimmerT_60666-T1, internal, 650, 775
-recovered GlimmerHMM_glimmerT_60666-T1, internal, 1724, 1826
-recovered GlimmerHMM_glimmerT_60666-T1, internal, 2112, 2176

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4789
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support