-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_723

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 68, 137
Sorry, prediction snap_scaffold_723-snap.2-T1 fails validation.
(CTC)	 AG	68-137	GT	AGG
(GTG)	 AG	1003-1065	GT	TGG
(GAT)	 AG	1705-1789	GC	GAG
-recovered snap_scaffold_723-snap.2-T1, terminal, 1705, 1789
-recovered snap_scaffold_723-snap.2-T1, internal, 68, 137
-recovered snap_scaffold_723-snap.2-T1, internal, 1003, 1065
-recovered snap_scaffold_723-snap.2-T1, internal, 1705, 1789

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 376, 503
Sorry, prediction snap_scaffold_723-snap.3-T1 fails validation.
(GTA)	 AG	376-503	GT	TGG
(AAG)	 AG	831-1029	GT	GGG
(GTT)	 AG	1140-1189	GT	AGG
(GAC)	 AG	1484-1567	AC	AGA
-recovered snap_scaffold_723-snap.3-T1, terminal, 1484, 1567
-recovered snap_scaffold_723-snap.3-T1, internal, 376, 503
-recovered snap_scaffold_723-snap.3-T1, internal, 831, 1029
-recovered snap_scaffold_723-snap.3-T1, internal, 1140, 1189
Couldn't classify 4566, 4744
Sorry, prediction Augustus_model.g40153.t1 fails validation.
(ATG)	 AG	49-100	GT	ACG
(GTA)	 AG	376-503	GT	TGG
(AAG)	 AG	831-1029	GT	GGG
(GTT)	 AG	1140-1189	GT	AGG
(GAC)	 AG	1484-1561	GT	GGG
(GTC)	 AG	2086-2142	GT	GGG
(AGA)	 AG	2299-2370	GT	CGG
(CTA)	 AG	2979-3113	GT	AGG
(GTG)	 AG	3720-3908	GT	AGG
(GAC)	 AG	4016-4140	GT	AGG
(GAG)	 AG	4566-4744	GT	TGG
-recovered Augustus_model.g40153.t1, initial, 49, 100
-recovered Augustus_model.g40153.t1, internal, 49, 100
-recovered Augustus_model.g40153.t1, internal, 376, 503
-recovered Augustus_model.g40153.t1, internal, 831, 1029
-recovered Augustus_model.g40153.t1, internal, 1140, 1189
-recovered Augustus_model.g40153.t1, internal, 1484, 1561
-recovered Augustus_model.g40153.t1, internal, 2086, 2142
-recovered Augustus_model.g40153.t1, internal, 2299, 2370
-recovered Augustus_model.g40153.t1, internal, 2979, 3113
-recovered Augustus_model.g40153.t1, internal, 3720, 3908
-recovered Augustus_model.g40153.t1, internal, 4016, 4140
-recovered Augustus_model.g40153.t1, internal, 4566, 4744
Couldn't classify 376, 503
Sorry, prediction GlimmerHMM_glimmerT_60662-T1 fails validation.
(GTA)	 AG	376-503	GT	TGG
(AAG)	 AG	831-1029	GT	GGG
(GTT)	 AG	1140-1189	GT	AGG
(GAC)	 AG	1484-1561	GT	GGG
(GTC)	 AG	2086-2142	GT	GGG
(CTA)	 AG	2979-3113	GT	AGG
(GTG)	 AG	3720-3908	GT	AGG
(GAC)	 AG	4016-4144	GT	CTG
(GAG)	 AG	4566-4583	AG	GAA
-recovered GlimmerHMM_glimmerT_60662-T1, terminal, 4566, 4583
-recovered GlimmerHMM_glimmerT_60662-T1, internal, 376, 503
-recovered GlimmerHMM_glimmerT_60662-T1, internal, 831, 1029
-recovered GlimmerHMM_glimmerT_60662-T1, internal, 1140, 1189
-recovered GlimmerHMM_glimmerT_60662-T1, internal, 1484, 1561
-recovered GlimmerHMM_glimmerT_60662-T1, internal, 2086, 2142
-recovered GlimmerHMM_glimmerT_60662-T1, internal, 2979, 3113
-recovered GlimmerHMM_glimmerT_60662-T1, internal, 3720, 3908
-recovered GlimmerHMM_glimmerT_60662-T1, internal, 4016, 4144
Couldn't classify 4566, 4744
Sorry, prediction snap_scaffold_723-snap.1-T1 fails validation.
(ATG)	 CC	2080-2142	GT	GGG
(CTA)	 AG	2979-3113	GT	AGG
(GTG)	 AG	3720-3908	GT	AGG
(GAC)	 AG	4016-4140	GT	AGG
(GAG)	 AG	4566-4744	GT	TGG
-recovered snap_scaffold_723-snap.1-T1, initial, 2080, 2142
-recovered snap_scaffold_723-snap.1-T1, internal, 2979, 3113
-recovered snap_scaffold_723-snap.1-T1, internal, 3720, 3908
-recovered snap_scaffold_723-snap.1-T1, internal, 4016, 4140
-recovered snap_scaffold_723-snap.1-T1, internal, 4566, 4744
Couldn't classify 3, 60
Couldn't classify 4566, 4746
Sorry, prediction pasa_asmbl_51620.p1 fails validation.
(TAT)	 TG	3-60	GT	GGG
(GTA)	 AG	376-503	GT	TGG
(AAG)	 AG	831-1029	GT	GGG
(GTT)	 AG	1140-1189	GT	AGG
(GAC)	 AG	1484-1561	GT	GGG
(GTC)	 AG	2086-2142	GT	GGG
(AGA)	 AG	2299-2370	GT	CGG
(CTA)	 AG	2979-3113	GT	AGG
(GTG)	 AG	3720-3908	GT	AGG
(GAC)	 AG	4016-4140	GT	AGG
(GAG)	 AG	4566-4746	GA	GTG
-recovered pasa_asmbl_51620.p1, internal, 376, 503
-recovered pasa_asmbl_51620.p1, internal, 831, 1029
-recovered pasa_asmbl_51620.p1, internal, 1140, 1189
-recovered pasa_asmbl_51620.p1, internal, 1484, 1561
-recovered pasa_asmbl_51620.p1, internal, 2086, 2142
-recovered pasa_asmbl_51620.p1, internal, 2299, 2370
-recovered pasa_asmbl_51620.p1, internal, 2979, 3113
-recovered pasa_asmbl_51620.p1, internal, 3720, 3908
-recovered pasa_asmbl_51620.p1, internal, 4016, 4140

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2729, rend_intergenic: 68  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4808
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2729, rend_intergenic: 68  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support