-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_72

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 191, 267
Sorry, prediction snap_scaffold_72-snap.1-T1 fails validation.
(TCG)	 AG	191-267	GT	TTG
(GTG)	 AG	4670-4769	GT	CCG
(GTT)	 AG	6187-6224	TC	AGT
-recovered snap_scaffold_72-snap.1-T1, terminal, 6187, 6224
-recovered snap_scaffold_72-snap.1-T1, internal, 191, 267
-recovered snap_scaffold_72-snap.1-T1, internal, 4670, 4769
Valid prediction for Augustus_model.g39551.t1
Valid prediction for GlimmerHMM_glimmerT_59689-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59689-T1 9319-9667-terminal-1 is invalid.
Valid prediction for snap_scaffold_72-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_59691-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_72-snap.5-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_72-snap.6-T1
Couldn't classify 3074, 3198
Sorry, prediction GlimmerHMM_glimmerT_59692-T1 fails validation.
(TAT)	 AG	3074-3198	GT	GGG
(TAC)	 AG	4173-4308	GT	GAG
-recovered GlimmerHMM_glimmerT_59692-T1, terminal, 4173, 4308
-recovered GlimmerHMM_glimmerT_59692-T1, internal, 3074, 3198
-recovered GlimmerHMM_glimmerT_59692-T1, internal, 4173, 4308
Valid prediction for GlimmerHMM_glimmerT_59690-T1
Valid prediction for snap_scaffold_72-snap.3-T1
Valid prediction for snap_scaffold_72-snap.7-T1
Valid prediction for snap_scaffold_72-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6224, rend_intergenic: 2494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16857, rend_intergenic: 8773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 24331
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 6224, rend_intergenic: 2494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16857, rend_intergenic: 8773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12028
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support