-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_719

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60656-T1
Valid prediction for HiQ_model.g40150.t1
Couldn't classify 4674, 4823
Sorry, prediction pasa_asmbl_51612.p1 fails validation.
(ATG)	 AC	2276-2377	GT	AGG
(GTG)	 AG	3044-3196	GT	AGG
(GTG)	 AG	3875-4038	GT	AGG
(GGC)	 AG	4445-4496	GT	GGG
(GTG)	 AG	4674-4823	GT	TGG
-recovered pasa_asmbl_51612.p1, initial, 2276, 2377
-recovered pasa_asmbl_51612.p1, internal, 3044, 3196
-recovered pasa_asmbl_51612.p1, internal, 3875, 4038
-recovered pasa_asmbl_51612.p1, internal, 4445, 4496
-recovered pasa_asmbl_51612.p1, internal, 4674, 4823
Couldn't classify 4674, 4823
Sorry, prediction snap_scaffold_719-snap.1-T1 fails validation.
(ATG)	 AC	2276-2377	GT	AGG
(GTG)	 AG	3044-3196	GT	AGG
(GTG)	 AG	3875-4179	GT	CTG
(GGC)	 AG	4445-4496	GT	GGG
(GTG)	 AG	4674-4823	GT	TGG
-recovered snap_scaffold_719-snap.1-T1, initial, 2276, 2377
-recovered snap_scaffold_719-snap.1-T1, internal, 3044, 3196
-recovered snap_scaffold_719-snap.1-T1, internal, 3875, 4179
-recovered snap_scaffold_719-snap.1-T1, internal, 4445, 4496
-recovered snap_scaffold_719-snap.1-T1, internal, 4674, 4823
Valid prediction for CodingQuarry_transcript_57794-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40149.t1
Couldn't classify 48, 79
Sorry, prediction snap_scaffold_719-snap.2-T1 fails validation.
(GTG)	 AG	48-79	GT	AGG
(CTC)	 AG	681-848	GT	CAG
(AAT)	 AG	2233-2322	AC	AAA
-recovered snap_scaffold_719-snap.2-T1, terminal, 2233, 2322
-recovered snap_scaffold_719-snap.2-T1, internal, 48, 79
-recovered snap_scaffold_719-snap.2-T1, internal, 681, 848

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4823, rend_intergenic: 2536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4857
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4823, rend_intergenic: 2536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support