-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_717

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 166, 557
Sorry, prediction Augustus_model.g40147.t1 fails validation.
(GCC)	 AG	166-557	GT	AGG
(GTG)	 AG	1074-1090	TG	AGT
-recovered Augustus_model.g40147.t1, terminal, 1074, 1090
-recovered Augustus_model.g40147.t1, internal, 166, 557
Couldn't classify 4279, 4770
Sorry, prediction snap_scaffold_717-snap.2-T1 fails validation.
(ATG)	 GG	1557-1657	GT	GGG
(ATG)	 AG	4279-4770	GT	AGG
-recovered snap_scaffold_717-snap.2-T1, initial, 1557, 1657
add_exon() Sorry, snap_scaffold_717-snap.2-T1 4279-4770-initial-1 is invalid.
-recovered snap_scaffold_717-snap.2-T1, initial, 4279, 4770
-recovered snap_scaffold_717-snap.2-T1, internal, 4279, 4770
Valid prediction for GlimmerHMM_glimmerT_60653-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1029, 1168
Sorry, prediction Augustus_model.g40148.t1 fails validation.
(TGG)	 AG	1029-1168	GT	CGG
(GGC)	 AG	2547-2602	GT	TGG
(CCC)	 AG	3331-3518	GG	GAG
-recovered Augustus_model.g40148.t1, terminal, 3331, 3518
-recovered Augustus_model.g40148.t1, internal, 1029, 1168
-recovered Augustus_model.g40148.t1, internal, 2547, 2602
Couldn't classify 1029, 1168
Couldn't classify 4442, 4745
Sorry, prediction snap_scaffold_717-snap.1-T1 fails validation.
(TGG)	 AG	1029-1168	GT	CGG
(GGC)	 AG	2547-2602	GT	TGG
(CCC)	 AG	3331-3508	GT	AGG
(GGA)	 AG	4442-4745	GT	AGG
add_exon() Sorry, snap_scaffold_717-snap.1-T1 3331-3508-terminal-3 is invalid.
-recovered snap_scaffold_717-snap.1-T1, terminal, 3331, 3508
-recovered snap_scaffold_717-snap.1-T1, internal, 1029, 1168
-recovered snap_scaffold_717-snap.1-T1, internal, 2547, 2602
-recovered snap_scaffold_717-snap.1-T1, internal, 3331, 3508
-recovered snap_scaffold_717-snap.1-T1, internal, 4442, 4745
Couldn't classify 1029, 1168
Sorry, prediction GlimmerHMM_glimmerT_60654-T1 fails validation.
(TGG)	 AG	1029-1168	GT	CGG
(GGC)	 AG	2547-2602	GT	TGG
(CCC)	 AG	3331-3518	GG	GAG
-recovered GlimmerHMM_glimmerT_60654-T1, terminal, 3331, 3518
-recovered GlimmerHMM_glimmerT_60654-T1, internal, 1029, 1168
-recovered GlimmerHMM_glimmerT_60654-T1, internal, 2547, 2602

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3837, rend_intergenic: 1557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4865
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3837, rend_intergenic: 1557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support