-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_71

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_71-snap.4-T1
Valid prediction for Augustus_model.g39549.t1
Valid prediction for GlimmerHMM_glimmerT_59681-T1
Valid prediction for GlimmerHMM_glimmerT_59683-T1
Valid prediction for snap_scaffold_71-snap.7-T1
Valid prediction for GlimmerHMM_glimmerT_59684-T1
Valid prediction for GlimmerHMM_glimmerT_59685-T1
Valid prediction for Augustus_model.g39550.t1
Valid prediction for Augustus_model.g39548.t1
Valid prediction for GlimmerHMM_glimmerT_59687-T1
Valid prediction for GlimmerHMM_glimmerT_59686-T1
Valid prediction for snap_scaffold_71-snap.2-T1
Valid prediction for snap_scaffold_71-snap.6-T1
Valid prediction for snap_scaffold_71-snap.9-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_71-snap.3-T1
Valid prediction for snap_scaffold_71-snap.1-T1
Valid prediction for snap_scaffold_71-snap.5-T1
Valid prediction for snap_scaffold_71-snap.8-T1
Valid prediction for GlimmerHMM_glimmerT_59688-T1
Valid prediction for Augustus_model.g39547.t1
Valid prediction for GlimmerHMM_glimmerT_59682-T1
Valid prediction for snap_scaffold_71-snap.10-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2437, rend_intergenic: 1777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5218, rend_intergenic: 2722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9222, rend_intergenic: 5703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15671, rend_intergenic: 9304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16707, rend_intergenic: 15928  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19549, rend_intergenic: 16816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 25000
-exon list size: 73


building trellis

1.3    
2.7    
4.0    
5.3    
6.7    
8.0    
9.3    
10.7    
12.0    
13.3    
14.7    
16.0    
17.3    
18.7    
20.0    
21.3    
22.7    
24.0    
25.3    
26.7    
28.0    
29.3    
30.7    
32.0    
33.3    
34.7    
36.0    
37.3    
38.7    
40.0    
41.3    
42.7    
44.0    
45.3    
46.7    
48.0    
49.3    
50.7    
52.0    
53.3    
54.7    
56.0    
57.3    
58.7    
60.0    
61.3    
62.7    
64.0    
65.3    
66.7    
68.0    
69.3    
70.7    
72.0    
73.3    
74.7    
76.0    
77.3    
78.7    
80.0    
81.3    
82.7    
84.0    
85.3    
86.7    
88.0    
89.3    
90.7    
92.0    
93.3    
94.7    
96.0    
97.3    
98.7    
-found 7 predictions from path traversal
Error with prediction: snap lend_intergenic: 2437, rend_intergenic: 1777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5218, rend_intergenic: 2722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9222, rend_intergenic: 5703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15671, rend_intergenic: 9304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16707, rend_intergenic: 15928  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19549, rend_intergenic: 16816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support