-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_709

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 50, 122
Couldn't classify 4755, 4839
Sorry, prediction snap_scaffold_709-snap.1-T1 fails validation.
(GTG)	 AG	50-122	GT	AGG
(GGG)	 AG	399-590	GT	ATG
(AAG)	 AG	817-899	GT	AGG
(ATC)	 AG	1012-1085	GT	CGG
(GAA)	 AG	2965-3061	GT	AGG
(ATT)	 AG	3754-3882	GT	CCG
(GCC)	 AG	4360-4433	GT	AAG
(GGT)	 AG	4755-4839	GT	TGG
-recovered snap_scaffold_709-snap.1-T1, internal, 50, 122
-recovered snap_scaffold_709-snap.1-T1, internal, 399, 590
-recovered snap_scaffold_709-snap.1-T1, internal, 817, 899
-recovered snap_scaffold_709-snap.1-T1, internal, 1012, 1085
-recovered snap_scaffold_709-snap.1-T1, internal, 2965, 3061
-recovered snap_scaffold_709-snap.1-T1, internal, 3754, 3882
-recovered snap_scaffold_709-snap.1-T1, internal, 4360, 4433
-recovered snap_scaffold_709-snap.1-T1, internal, 4755, 4839
Couldn't classify 399, 590
Sorry, prediction GlimmerHMM_glimmerT_60646-T1 fails validation.
(GGG)	 AG	399-590	GT	ATG
(AAG)	 AG	817-899	GT	AGG
(ATC)	 AG	1012-1085	GT	CGG
(GAA)	 AG	2965-3061	GT	AGG
(CGG)	 AG	3469-3546	GT	ACG
(ATT)	 AG	3754-3818	GT	TGG
(GGT)	 AG	4755-4868	CC	GAC
-recovered GlimmerHMM_glimmerT_60646-T1, terminal, 4755, 4868
-recovered GlimmerHMM_glimmerT_60646-T1, internal, 399, 590
-recovered GlimmerHMM_glimmerT_60646-T1, internal, 817, 899
-recovered GlimmerHMM_glimmerT_60646-T1, internal, 1012, 1085
-recovered GlimmerHMM_glimmerT_60646-T1, internal, 2965, 3061
-recovered GlimmerHMM_glimmerT_60646-T1, internal, 3469, 3546
-recovered GlimmerHMM_glimmerT_60646-T1, internal, 3754, 3818
Couldn't classify 399, 590
Couldn't classify 4778, 4839
Sorry, prediction Augustus_model.g40143.t1 fails validation.
(GGG)	 AG	399-590	GT	ATG
(AAG)	 AG	817-899	GT	AGG
(ATC)	 AG	1012-1085	GT	CGG
(GAA)	 AG	2965-3061	GT	AGG
(CGG)	 AG	3469-3546	GT	ACG
(ATT)	 AG	3754-3818	GT	TGG
(GCT)	 AG	4130-4198	GT	CAG
(GCC)	 AG	4360-4433	GT	AAG
(TGT)	 AG	4778-4839	GT	TGG
-recovered Augustus_model.g40143.t1, internal, 399, 590
-recovered Augustus_model.g40143.t1, internal, 817, 899
-recovered Augustus_model.g40143.t1, internal, 1012, 1085
-recovered Augustus_model.g40143.t1, internal, 2965, 3061
-recovered Augustus_model.g40143.t1, internal, 3469, 3546
-recovered Augustus_model.g40143.t1, internal, 3754, 3818
-recovered Augustus_model.g40143.t1, internal, 4130, 4198
-recovered Augustus_model.g40143.t1, internal, 4360, 4433
-recovered Augustus_model.g40143.t1, internal, 4778, 4839

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4898
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support