-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_707

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4515, 4647
Sorry, prediction snap_scaffold_707-snap.1-T1 fails validation.
(ATG)	 GG	1919-2179	GT	AGG
(GTC)	 AG	2381-2506	GT	AGG
(AAG)	 AG	3920-3978	GT	AAG
(GTT)	 AG	4126-4242	GT	AAG
(GCT)	 AG	4515-4647	GT	CGG
-recovered snap_scaffold_707-snap.1-T1, initial, 1919, 2179
-recovered snap_scaffold_707-snap.1-T1, internal, 2381, 2506
-recovered snap_scaffold_707-snap.1-T1, internal, 3920, 3978
-recovered snap_scaffold_707-snap.1-T1, internal, 4126, 4242
-recovered snap_scaffold_707-snap.1-T1, internal, 4515, 4647
Couldn't classify 70, 142
Sorry, prediction snap_scaffold_707-snap.2-T1 fails validation.
(CAA)	 AG	70-142	GT	AGG
(GAT)	 AG	657-793	GT	AGG
(CAG)	 AG	1227-1316	GT	AGG
(GAG)	 AG	1628-1762	GT	AGG
(TTA)	 AG	1799-1900	GG	AAG
-recovered snap_scaffold_707-snap.2-T1, terminal, 1799, 1900
-recovered snap_scaffold_707-snap.2-T1, internal, 70, 142
-recovered snap_scaffold_707-snap.2-T1, internal, 657, 793
-recovered snap_scaffold_707-snap.2-T1, internal, 1227, 1316
-recovered snap_scaffold_707-snap.2-T1, internal, 1628, 1762
Couldn't classify 4515, 4647
Sorry, prediction Augustus_model.g40141.t1 fails validation.
(ATG)	 GG	80-142	GT	AGG
(GGT)	 AG	674-793	GT	AGG
(CAG)	 AG	1227-1316	GT	AGG
(GAG)	 AG	1628-1762	GT	AGG
(GTC)	 AG	2381-2506	GT	AGG
(AAG)	 AG	3920-3978	GT	AAG
(GTT)	 AG	4126-4242	GT	AAG
(GCT)	 AG	4515-4647	GT	CGG
-recovered Augustus_model.g40141.t1, initial, 80, 142
-recovered Augustus_model.g40141.t1, internal, 674, 793
-recovered Augustus_model.g40141.t1, internal, 1227, 1316
-recovered Augustus_model.g40141.t1, internal, 1628, 1762
-recovered Augustus_model.g40141.t1, internal, 2381, 2506
-recovered Augustus_model.g40141.t1, internal, 3920, 3978
-recovered Augustus_model.g40141.t1, internal, 4126, 4242
-recovered Augustus_model.g40141.t1, internal, 4515, 4647
Valid prediction for GlimmerHMM_glimmerT_60643-T1
Couldn't classify 2474, 2506
Couldn't classify 4515, 4641
Sorry, prediction pasa_asmbl_51607.p1 fails validation.
(CAG)	 GC	2474-2506	GT	AGG
(AAG)	 AG	3920-3978	GT	AAG
(GTT)	 AG	4126-4242	GT	AAG
(GCT)	 AG	4515-4641	AG	CCA
-recovered pasa_asmbl_51607.p1, internal, 3920, 3978
-recovered pasa_asmbl_51607.p1, internal, 4126, 4242
Couldn't classify 657, 793
Sorry, prediction GlimmerHMM_glimmerT_60644-T1 fails validation.
(GAT)	 AG	657-793	GT	AGG
(CCA)	 AG	1223-1324	GT	GTG
(CAG)	 AG	1625-1768	CG	GAC
-recovered GlimmerHMM_glimmerT_60644-T1, terminal, 1625, 1768
-recovered GlimmerHMM_glimmerT_60644-T1, internal, 657, 793
-recovered GlimmerHMM_glimmerT_60644-T1, internal, 1223, 1324

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4903
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support