-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_705

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 202, 308
Sorry, prediction Augustus_model.g40139.t1 fails validation.
(GGT)	 AG	202-308	GT	GGG
(GTG)	 AG	966-1142	GT	TGG
(TAC)	 AG	1377-1496	AC	AGA
-recovered Augustus_model.g40139.t1, terminal, 1377, 1496
-recovered Augustus_model.g40139.t1, internal, 202, 308
-recovered Augustus_model.g40139.t1, internal, 966, 1142
Couldn't classify 202, 308
Sorry, prediction snap_scaffold_705-snap.1-T1 fails validation.
(GGT)	 AG	202-308	GT	GGG
(GTG)	 AG	966-1142	GT	TGG
(TAC)	 AG	1377-1496	AC	AGA
-recovered snap_scaffold_705-snap.1-T1, terminal, 1377, 1496
-recovered snap_scaffold_705-snap.1-T1, internal, 202, 308
-recovered snap_scaffold_705-snap.1-T1, internal, 966, 1142
Valid prediction for GlimmerHMM_glimmerT_60639-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4925
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support