-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_701

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4754, 4896
Sorry, prediction snap_scaffold_701-snap.1-T1 fails validation.
(ATG)	 TT	2507-2564	GT	AGG
(CTT)	 AG	2969-3266	GT	AGG
(GGG)	 AG	3756-3819	GT	CAG
(AAG)	 AG	4527-4633	GT	AGG
(GAA)	 AG	4754-4896	GT	GAG
-recovered snap_scaffold_701-snap.1-T1, initial, 2507, 2564
-recovered snap_scaffold_701-snap.1-T1, internal, 2969, 3266
-recovered snap_scaffold_701-snap.1-T1, internal, 3756, 3819
-recovered snap_scaffold_701-snap.1-T1, internal, 4527, 4633
-recovered snap_scaffold_701-snap.1-T1, internal, 4754, 4896

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_51603.p1
Valid prediction for HiQ_model.g40137.t1
Couldn't classify 64, 190
Sorry, prediction snap_scaffold_701-snap.2-T1 fails validation.
(CCC)	 AG	64-190	GT	AGG
(GGT)	 AG	371-512	GT	AGG
(GAG)	 AG	616-721	GT	AGG
(AGC)	 AG	1073-1203	GT	AGG
(GGC)	 AG	1306-1401	GT	AGG
(GGT)	 AG	1712-2353	TA	AAT
-recovered snap_scaffold_701-snap.2-T1, terminal, 1712, 2353
-recovered snap_scaffold_701-snap.2-T1, internal, 64, 190
-recovered snap_scaffold_701-snap.2-T1, internal, 371, 512
-recovered snap_scaffold_701-snap.2-T1, internal, 616, 721
-recovered snap_scaffold_701-snap.2-T1, internal, 1073, 1203
-recovered snap_scaffold_701-snap.2-T1, internal, 1306, 1401
Valid prediction for GlimmerHMM_glimmerT_60636-T1
Valid prediction for GlimmerHMM_glimmerT_60635-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4896, rend_intergenic: 2583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4935
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4896, rend_intergenic: 2583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support