-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_700

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_700-snap.1-T1
add_exon() Sorry, snap_scaffold_700-snap.1-T1 777-973-terminal-1 is invalid.
Couldn't classify 3205, 3301
Sorry, prediction snap_scaffold_700-snap.2-T1 fails validation.
(ATG)	 GC	1357-1404	GT	AGG
(CGA)	 AG	2968-3088	GT	GGG
(GAT)	 AG	3205-3301	GT	AGG
-recovered snap_scaffold_700-snap.2-T1, initial, 1357, 1404
-recovered snap_scaffold_700-snap.2-T1, internal, 2968, 3088
-recovered snap_scaffold_700-snap.2-T1, internal, 3205, 3301
Valid prediction for Augustus_model.g40136.t1
Valid prediction for GlimmerHMM_glimmerT_60633-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 328, 389
Sorry, prediction GlimmerHMM_glimmerT_60634-T1 fails validation.
(CAA)	 AG	328-389	GT	AAG
(GGA)	 AG	1012-1122	CA	AAC
-recovered GlimmerHMM_glimmerT_60634-T1, terminal, 1012, 1122
-recovered GlimmerHMM_glimmerT_60634-T1, internal, 328, 389

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4935
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support