-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_70

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_57785-T1
Valid prediction for snap_scaffold_70-snap.2-T1
Valid prediction for Augustus_model.g39546.t1
Valid prediction for CodingQuarry_transcript_57783-T1
Valid prediction for snap_scaffold_70-snap.1-T1
Valid prediction for snap_scaffold_70-snap.3-T1
Couldn't classify 7895, 8332
Sorry, prediction pasa_asmbl_51598.p1 fails validation.
(CTC)	 GT	7895-8332	TC	TCT
Valid prediction for HiQ_model.g39545.t1
Valid prediction for snap_scaffold_70-snap.5-T1
Valid prediction for GlimmerHMM_glimmerT_59679-T1
Valid prediction for GlimmerHMM_glimmerT_59680-T1
Valid prediction for Augustus_model.g39544.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_70-snap.4-T1
Valid prediction for snap_scaffold_70-snap.6-T1
Couldn't classify 451, 590
Sorry, prediction snap_scaffold_70-snap.7-T1 fails validation.
(GTC)	 AG	451-590	GT	GTG
(GGG)	 AG	1473-1587	GT	TTG
(TGA)	 AG	1705-1721	GG	AAG
-recovered snap_scaffold_70-snap.7-T1, terminal, 1705, 1721
-recovered snap_scaffold_70-snap.7-T1, internal, 451, 590
-recovered snap_scaffold_70-snap.7-T1, internal, 1473, 1587

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 24707, rend_intergenic: 22133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 25000
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 24707, rend_intergenic: 22133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support