-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_8364180-8539009

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_7-snap.1671-T1
Valid prediction for CodingQuarry_transcript_57566-T1
Valid prediction for GlimmerHMM_glimmerT_17773-T1
Valid prediction for snap_scaffold_7-snap.1672-T1
Valid prediction for snap_scaffold_7-snap.1677-T1
Valid prediction for snap_scaffold_7-snap.1687-T1
Valid prediction for GlimmerHMM_glimmerT_17756-T1
Valid prediction for snap_scaffold_7-snap.1681-T1
Valid prediction for HiQ_model.g11925.t1
Valid prediction for GlimmerHMM_glimmerT_17769-T1
Valid prediction for snap_scaffold_7-snap.1669-T1
Valid prediction for GlimmerHMM_glimmerT_17765-T1
Valid prediction for Augustus_model.g11923.t1
Valid prediction for pasa_asmbl_50012.p1
Valid prediction for snap_scaffold_7-snap.1670-T1
Valid prediction for snap_scaffold_7-snap.1667-T1
Valid prediction for GlimmerHMM_glimmerT_17771-T1
Valid prediction for snap_scaffold_7-snap.1662-T1
Valid prediction for Augustus_model.g11920.t1
Valid prediction for snap_scaffold_7-snap.1678-T1
Valid prediction for Augustus_model.g11927.t1
Valid prediction for GlimmerHMM_glimmerT_17759-T1
Valid prediction for GlimmerHMM_glimmerT_17758-T1
Valid prediction for snap_scaffold_7-snap.1684-T1
Valid prediction for Augustus_model.g11926.t1
Valid prediction for Augustus_model.g11922.t1
Valid prediction for snap_scaffold_7-snap.1680-T1
Valid prediction for snap_scaffold_7-snap.1685-T1
Valid prediction for snap_scaffold_7-snap.1688-T1
Valid prediction for GlimmerHMM_glimmerT_17763-T1
Valid prediction for snap_scaffold_7-snap.1679-T1
Valid prediction for snap_scaffold_7-snap.1665-T1
Valid prediction for GlimmerHMM_glimmerT_17757-T1
Valid prediction for Augustus_model.g11924.t1
Valid prediction for pasa_asmbl_49987.p1
Valid prediction for snap_scaffold_7-snap.1666-T1
Valid prediction for Augustus_model.g11918.t1
Valid prediction for GlimmerHMM_glimmerT_17770-T1
Valid prediction for Augustus_model.g11913.t1
Valid prediction for snap_scaffold_7-snap.1686-T1
Valid prediction for GlimmerHMM_glimmerT_17774-T1
Valid prediction for GlimmerHMM_glimmerT_17776-T1
Valid prediction for GlimmerHMM_glimmerT_17766-T1
Valid prediction for GlimmerHMM_glimmerT_17777-T1
Valid prediction for Augustus_model.g11919.t1
Valid prediction for CodingQuarry_transcript_57567-T1
Couldn't classify 139755, 139826
Sorry, prediction pasa_asmbl_50001.p1 fails validation.
(AGA)	 GC	139755-139826	GT	AGG
(GTT)	 AG	142483-142505	GT	AAG
(CAA)	 AG	143381-143587	GT	GGG
(TAC)	 AG	145901-146067	GT	CAG
(TGC)	 AG	146351-146387	GT	AGG
(AGA)	 AG	146928-147024	AA	AAA
-recovered pasa_asmbl_50001.p1, terminal, 146928, 147024
-recovered pasa_asmbl_50001.p1, internal, 142483, 142505
-recovered pasa_asmbl_50001.p1, internal, 143381, 143587
-recovered pasa_asmbl_50001.p1, internal, 145901, 146067
-recovered pasa_asmbl_50001.p1, internal, 146351, 146387
Valid prediction for pasa_asmbl_49994.p1
Valid prediction for Augustus_model.g11915.t1
Valid prediction for HiQ_model.g11914.t1
Valid prediction for Augustus_model.g11917.t1
Valid prediction for Augustus_model.g11921.t1
Valid prediction for CodingQuarry_transcript_57565-T1
Valid prediction for snap_scaffold_7-snap.1683-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.1674-T1
Valid prediction for GlimmerHMM_glimmerT_17764-T1
Valid prediction for snap_scaffold_7-snap.1668-T1
Valid prediction for snap_scaffold_7-snap.1676-T1
Valid prediction for snap_scaffold_7-snap.1689-T1
Valid prediction for Augustus_model.g11912.t1
Valid prediction for Augustus_model.g11911.t1
Valid prediction for GlimmerHMM_glimmerT_17762-T1
Valid prediction for Augustus_model.g11928.t1
Valid prediction for Augustus_model.g11929.t1
Valid prediction for snap_scaffold_7-snap.1673-T1
Valid prediction for GlimmerHMM_glimmerT_17761-T1
Valid prediction for snap_scaffold_7-snap.1664-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.1690-T1
Valid prediction for Augustus_model.g11916.t1
Valid prediction for GlimmerHMM_glimmerT_17754-T1
Valid prediction for GlimmerHMM_glimmerT_17775-T1
Valid prediction for snap_scaffold_7-snap.1682-T1
Valid prediction for GlimmerHMM_glimmerT_17755-T1
Valid prediction for GlimmerHMM_glimmerT_17772-T1
Valid prediction for snap_scaffold_7-snap.1675-T1
Valid prediction for GlimmerHMM_glimmerT_17767-T1
Valid prediction for GlimmerHMM_glimmerT_17778-T1
Valid prediction for GlimmerHMM_glimmerT_17768-T1
Valid prediction for snap_scaffold_7-snap.1663-T1
Valid prediction for GlimmerHMM_glimmerT_17760-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7894, rend_intergenic: 3604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22385, rend_intergenic: 20917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86538, rend_intergenic: 65395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 174830
-exon list size: 279


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.6    
3.9    
4.3    
4.6    
5.0    
5.3    
5.7    
6.0    
6.4    
6.8    
7.1    
7.5    
7.8    
8.2    
8.5    
8.9    
9.3    
9.6    
10.0    
10.3    
10.7    
11.0    
11.4    
11.7    
12.1    
12.5    
12.8    
13.2    
13.5    
13.9    
14.2    
14.6    
14.9    
15.3    
15.7    
16.0    
16.4    
16.7    
17.1    
17.4    
17.8    
18.1    
18.5    
18.9    
19.2    
19.6    
19.9    
20.3    
20.6    
21.0    
21.4    
21.7    
22.1    
22.4    
22.8    
23.1    
23.5    
23.8    
24.2    
24.6    
24.9    
25.3    
25.6    
26.0    
26.3    
26.7    
27.0    
27.4    
27.8    
28.1    
28.5    
28.8    
29.2    
29.5    
29.9    
30.2    
30.6    
31.0    
31.3    
31.7    
32.0    
32.4    
32.7    
33.1    
33.5    
33.8    
34.2    
34.5    
34.9    
35.2    
35.6    
35.9    
36.3    
36.7    
37.0    
37.4    
37.7    
38.1    
38.4    
38.8    
39.1    
39.5    
39.9    
40.2    
40.6    
40.9    
41.3    
41.6    
42.0    
42.3    
42.7    
43.1    
43.4    
43.8    
44.1    
44.5    
44.8    
45.2    
45.6    
45.9    
46.3    
46.6    
47.0    
47.3    
47.7    
48.0    
48.4    
48.8    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.2    
51.6    
52.0    
52.3    
52.7    
53.0    
53.4    
53.7    
54.1    
54.4    
54.8    
55.2    
55.5    
55.9    
56.2    
56.6    
56.9    
57.3    
57.7    
58.0    
58.4    
58.7    
59.1    
59.4    
59.8    
60.1    
60.5    
60.9    
61.2    
61.6    
61.9    
62.3    
62.6    
63.0    
63.3    
63.7    
64.1    
64.4    
64.8    
65.1    
65.5    
65.8    
66.2    
66.5    
66.9    
67.3    
67.6    
68.0    
68.3    
68.7    
69.0    
69.4    
69.8    
70.1    
70.5    
70.8    
71.2    
71.5    
71.9    
72.2    
72.6    
73.0    
73.3    
73.7    
74.0    
74.4    
74.7    
75.1    
75.4    
75.8    
76.2    
76.5    
76.9    
77.2    
77.6    
77.9    
78.3    
78.6    
79.0    
79.4    
79.7    
80.1    
80.4    
80.8    
81.1    
81.5    
81.9    
82.2    
82.6    
82.9    
83.3    
83.6    
84.0    
84.3    
84.7    
85.1    
85.4    
85.8    
86.1    
86.5    
86.8    
87.2    
87.5    
87.9    
88.3    
88.6    
89.0    
89.3    
89.7    
90.0    
90.4    
90.7    
91.1    
91.5    
91.8    
92.2    
92.5    
92.9    
93.2    
93.6    
94.0    
94.3    
94.7    
95.0    
95.4    
95.7    
96.1    
96.4    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 7894, rend_intergenic: 3604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22385, rend_intergenic: 20917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86538, rend_intergenic: 65395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support