-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_7129463-7246022

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_7-snap.1455-T1
Valid prediction for HiQ_model.g11808.t1
Valid prediction for GlimmerHMM_glimmerT_17621-T1
Valid prediction for HiQ_model.g11809.t1
Valid prediction for pasa_asmbl_49900.p1
Valid prediction for snap_scaffold_7-snap.1457-T1
Couldn't classify 95101, 95142
Couldn't classify 97758, 97792
Sorry, prediction pasa_asmbl_49907.p1 fails validation.
(ATT)	 AT	95101-95142	GT	AGG
(CCT)	 AG	95845-95998	GT	AGG
(CTT)	 AG	96208-96324	GT	AGG
(TTT)	 AG	96408-96562	GT	AGG
(CTG)	 AG	97082-97208	GT	AGG
(CTT)	 AG	97422-97532	GT	TGG
(CCG)	 AG	97758-97792	AC	GCA
-recovered pasa_asmbl_49907.p1, internal, 95845, 95998
-recovered pasa_asmbl_49907.p1, internal, 96208, 96324
-recovered pasa_asmbl_49907.p1, internal, 96408, 96562
-recovered pasa_asmbl_49907.p1, internal, 97082, 97208
-recovered pasa_asmbl_49907.p1, internal, 97422, 97532
Valid prediction for snap_scaffold_7-snap.1445-T1
Valid prediction for GlimmerHMM_glimmerT_17619-T1
Valid prediction for snap_scaffold_7-snap.1443-T1
Valid prediction for GlimmerHMM_glimmerT_17613-T1
Couldn't classify 81939, 81972
Couldn't classify 83540, 83587
Sorry, prediction pasa_asmbl_50628.p1 fails validation.
(AAG)	 TC	81939-81972	GT	TGG
(AGA)	 AG	82079-82210	GT	AGG
(GGT)	 AG	82485-82616	GT	AGG
(GCA)	 AG	82877-83043	GT	AGG
(GAA)	 AG	83540-83587	CC	AGC
-recovered pasa_asmbl_50628.p1, internal, 82079, 82210
-recovered pasa_asmbl_50628.p1, internal, 82485, 82616
-recovered pasa_asmbl_50628.p1, internal, 82877, 83043
Valid prediction for Augustus_model.g11807.t1
Couldn't classify 88125, 88131
Couldn't classify 90576, 90676
Sorry, prediction pasa_asmbl_49906.p1 fails validation.
(CAC)	 TG	88125-88131	GT	TGG
(CAC)	 AG	88423-88634	GT	AGG
(ATC)	 AG	88889-89097	GT	AGG
(GTA)	 AG	89569-89918	GT	TGG
(GCC)	 AG	90576-90676	CA	TGC
-recovered pasa_asmbl_49906.p1, internal, 88423, 88634
-recovered pasa_asmbl_49906.p1, internal, 88889, 89097
-recovered pasa_asmbl_49906.p1, internal, 89569, 89918
Valid prediction for GlimmerHMM_glimmerT_17616-T1
Valid prediction for GlimmerHMM_glimmerT_17620-T1
Valid prediction for snap_scaffold_7-snap.1448-T1
Valid prediction for GlimmerHMM_glimmerT_17610-T1
Couldn't classify 103617, 103760
Couldn't classify 109818, 109990
Sorry, prediction pasa_asmbl_49910.p1 fails validation.
(TCG)	 CC	103617-103760	GT	AGG
(GTG)	 AG	103897-104040	GT	CGG
(CTG)	 AG	105875-106004	GT	AGG
(ACA)	 AG	108390-108521	GT	AGG
(GTT)	 AG	108887-109048	GT	AGG
(GTC)	 AG	109818-109990	GG	AAG
-recovered pasa_asmbl_49910.p1, internal, 103897, 104040
-recovered pasa_asmbl_49910.p1, internal, 105875, 106004
-recovered pasa_asmbl_49910.p1, internal, 108390, 108521
-recovered pasa_asmbl_49910.p1, internal, 108887, 109048
Valid prediction for pasa_asmbl_49904.p1
Valid prediction for GlimmerHMM_glimmerT_17614-T1
Valid prediction for Augustus_model.g11804.t1
Couldn't classify 79515, 79746
Couldn't classify 80428, 80534
Sorry, prediction pasa_asmbl_50619.p1 fails validation.
(ACG)	 GG	79515-79746	GT	AGG
(GTG)	 AG	80428-80534	GG	AGG
Valid prediction for snap_scaffold_7-snap.1447-T1
Valid prediction for snap_scaffold_7-snap.1453-T1
Valid prediction for GlimmerHMM_glimmerT_17617-T1
Couldn't classify 99718, 99880
Couldn't classify 102830, 103097
Sorry, prediction pasa_asmbl_49909.p1 fails validation.
(ACC)	 TG	99718-99880	GT	AGG
(GCA)	 AG	100118-100318	GT	CAG
(CCT)	 AG	100831-101110	GT	AGG
(TAT)	 AG	101264-101520	GT	CAG
(ACC)	 AG	101849-101957	GT	AGG
(GAT)	 AG	102091-102327	GT	GAG
(ACT)	 AG	102830-103097	CC	GGC
-recovered pasa_asmbl_49909.p1, terminal, 102091, 102327
-recovered pasa_asmbl_49909.p1, internal, 100118, 100318
-recovered pasa_asmbl_49909.p1, internal, 100831, 101110
-recovered pasa_asmbl_49909.p1, internal, 101264, 101520
-recovered pasa_asmbl_49909.p1, internal, 101849, 101957
-recovered pasa_asmbl_49909.p1, internal, 102091, 102327
Valid prediction for GlimmerHMM_glimmerT_17612-T1
Couldn't classify 98446, 98770
Couldn't classify 99456, 99548
Sorry, prediction pasa_asmbl_49908.p1 fails validation.
(GCC)	 AC	98446-98770	GT	AGG
(GCG)	 AG	98859-99034	GT	AGG
(GGC)	 AG	99456-99548	AT	ACA
-recovered pasa_asmbl_49908.p1, internal, 98859, 99034
Valid prediction for snap_scaffold_7-snap.1456-T1
Valid prediction for GlimmerHMM_glimmerT_17618-T1
Valid prediction for Augustus_model.g11811.t1
Valid prediction for CodingQuarry_transcript_57545-T1
Valid prediction for Augustus_model.g11806.t1
Valid prediction for Augustus_model.g11810.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.1446-T1
Valid prediction for GlimmerHMM_glimmerT_17622-T1
Valid prediction for snap_scaffold_7-snap.1450-T1
Valid prediction for snap_scaffold_7-snap.1444-T1
Valid prediction for snap_scaffold_7-snap.1460-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.1459-T1
Valid prediction for snap_scaffold_7-snap.1452-T1
Valid prediction for snap_scaffold_7-snap.1449-T1
Valid prediction for snap_scaffold_7-snap.1451-T1
Valid prediction for snap_scaffold_7-snap.1454-T1
Valid prediction for GlimmerHMM_glimmerT_17611-T1
Valid prediction for Augustus_model.g11805.t1
Valid prediction for GlimmerHMM_glimmerT_17615-T1
Valid prediction for snap_scaffold_7-snap.1461-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10021, rend_intergenic: 7209  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13224, rend_intergenic: 10160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19061, rend_intergenic: 14541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52329, rend_intergenic: 25801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58880, rend_intergenic: 55182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 116560
-exon list size: 245


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.2    
3.6    
4.0    
4.5    
4.9    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.7    
10.1    
10.5    
10.9    
11.3    
11.7    
12.1    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.6    
17.0    
17.4    
17.8    
18.2    
18.6    
19.0    
19.4    
19.8    
20.2    
20.6    
21.1    
21.5    
21.9    
22.3    
22.7    
23.1    
23.5    
23.9    
24.3    
24.7    
25.1    
25.5    
25.9    
26.3    
26.7    
27.1    
27.5    
27.9    
28.3    
28.7    
29.1    
29.6    
30.0    
30.4    
30.8    
31.2    
31.6    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.8    
35.2    
35.6    
36.0    
36.4    
36.8    
37.2    
37.7    
38.1    
38.5    
38.9    
39.3    
39.7    
40.1    
40.5    
40.9    
41.3    
41.7    
42.1    
42.5    
42.9    
43.3    
43.7    
44.1    
44.5    
44.9    
45.3    
45.7    
46.2    
46.6    
47.0    
47.4    
47.8    
48.2    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.8    
52.2    
52.6    
53.0    
53.4    
53.8    
54.3    
54.7    
55.1    
55.5    
55.9    
56.3    
56.7    
57.1    
57.5    
57.9    
58.3    
58.7    
59.1    
59.5    
59.9    
60.3    
60.7    
61.1    
61.5    
61.9    
62.3    
62.8    
63.2    
63.6    
64.0    
64.4    
64.8    
65.2    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.4    
68.8    
69.2    
69.6    
70.0    
70.4    
70.9    
71.3    
71.7    
72.1    
72.5    
72.9    
73.3    
73.7    
74.1    
74.5    
74.9    
75.3    
75.7    
76.1    
76.5    
76.9    
77.3    
77.7    
78.1    
78.5    
78.9    
79.4    
79.8    
80.2    
80.6    
81.0    
81.4    
81.8    
82.2    
82.6    
83.0    
83.4    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.9    
88.3    
88.7    
89.1    
89.5    
89.9    
90.3    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.1    
95.5    
96.0    
96.4    
96.8    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 14 predictions from path traversal
Error with prediction: snap lend_intergenic: 10021, rend_intergenic: 7209  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13224, rend_intergenic: 10160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19061, rend_intergenic: 14541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52329, rend_intergenic: 25801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58880, rend_intergenic: 55182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support