-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_6312592-6489128

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g11732.t1
Valid prediction for GlimmerHMM_glimmerT_17549-T1
Valid prediction for snap_scaffold_7-snap.1324-T1
Valid prediction for snap_scaffold_7-snap.1309-T1
Valid prediction for GlimmerHMM_glimmerT_17533-T1
Valid prediction for snap_scaffold_7-snap.1329-T1
Valid prediction for CodingQuarry_transcript_57531-T1
Valid prediction for GlimmerHMM_glimmerT_17531-T1
Valid prediction for snap_scaffold_7-snap.1330-T1
Valid prediction for GlimmerHMM_glimmerT_17529-T1
Valid prediction for GlimmerHMM_glimmerT_17546-T1
Valid prediction for snap_scaffold_7-snap.1336-T1
Valid prediction for Augustus_model.g11737.t1
Valid prediction for snap_scaffold_7-snap.1304-T1
Valid prediction for GlimmerHMM_glimmerT_17547-T1
Valid prediction for Augustus_model.g11741.t1
Valid prediction for GlimmerHMM_glimmerT_17544-T1
Valid prediction for snap_scaffold_7-snap.1321-T1
Valid prediction for snap_scaffold_7-snap.1313-T1
Valid prediction for snap_scaffold_7-snap.1303-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g11735.t1
Valid prediction for Augustus_model.g11736.t1
Valid prediction for GlimmerHMM_glimmerT_17526-T1
Valid prediction for GlimmerHMM_glimmerT_17548-T1
Valid prediction for snap_scaffold_7-snap.1327-T1
Valid prediction for GlimmerHMM_glimmerT_17539-T1
Valid prediction for GlimmerHMM_glimmerT_17530-T1
Valid prediction for snap_scaffold_7-snap.1338-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.1323-T1
Valid prediction for snap_scaffold_7-snap.1337-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for HiQ_model.g11739.t1
Valid prediction for snap_scaffold_7-snap.1306-T1
Valid prediction for snap_scaffold_7-snap.1319-T1
Valid prediction for GlimmerHMM_glimmerT_17536-T1
Valid prediction for GlimmerHMM_glimmerT_17524-T1
Valid prediction for GlimmerHMM_glimmerT_17541-T1
Valid prediction for snap_scaffold_7-snap.1311-T1
Valid prediction for snap_scaffold_7-snap.1332-T1
Valid prediction for GlimmerHMM_glimmerT_17525-T1
Valid prediction for pasa_asmbl_49862.p1
Valid prediction for snap_scaffold_7-snap.1314-T1
Valid prediction for snap_scaffold_7-snap.1335-T1
Valid prediction for snap_scaffold_7-snap.1325-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.1322-T1
Valid prediction for snap_scaffold_7-snap.1310-T1
Valid prediction for snap_scaffold_7-snap.1299-T1
Valid prediction for snap_scaffold_7-snap.1320-T1
Valid prediction for GlimmerHMM_glimmerT_17542-T1
Valid prediction for GlimmerHMM_glimmerT_17528-T1
Valid prediction for GlimmerHMM_glimmerT_17545-T1
Valid prediction for Augustus_model.g11740.t1
Valid prediction for snap_scaffold_7-snap.1317-T1
Valid prediction for GlimmerHMM_glimmerT_17532-T1
Valid prediction for GlimmerHMM_glimmerT_17538-T1
Valid prediction for snap_scaffold_7-snap.1328-T1
Valid prediction for snap_scaffold_7-snap.1301-T1
Valid prediction for snap_scaffold_7-snap.1315-T1
Valid prediction for snap_scaffold_7-snap.1312-T1
Valid prediction for Augustus_model.g11733.t1
Valid prediction for GlimmerHMM_glimmerT_17543-T1
Valid prediction for snap_scaffold_7-snap.1307-T1
Valid prediction for Augustus_model.g11738.t1
Valid prediction for snap_scaffold_7-snap.1308-T1
Valid prediction for snap_scaffold_7-snap.1316-T1
Valid prediction for snap_scaffold_7-snap.1305-T1
Valid prediction for snap_scaffold_7-snap.1302-T1
Valid prediction for snap_scaffold_7-snap.1333-T1
Valid prediction for GlimmerHMM_glimmerT_17535-T1
Valid prediction for GlimmerHMM_glimmerT_17523-T1
Valid prediction for snap_scaffold_7-snap.1300-T1
Valid prediction for GlimmerHMM_glimmerT_17540-T1
Valid prediction for Augustus_model.g11734.t1
Valid prediction for snap_scaffold_7-snap.1326-T1
Valid prediction for snap_scaffold_7-snap.1331-T1
Valid prediction for GlimmerHMM_glimmerT_17534-T1
Valid prediction for snap_scaffold_7-snap.1318-T1
Valid prediction for snap_scaffold_7-snap.1334-T1
Valid prediction for GlimmerHMM_glimmerT_17537-T1
Valid prediction for GlimmerHMM_glimmerT_17527-T1
Valid prediction for Augustus_model.g11731.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20657, rend_intergenic: 18813  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28160, rend_intergenic: 25433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79105, rend_intergenic: 76497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79967, rend_intergenic: 79268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82584, rend_intergenic: 80711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104224, rend_intergenic: 100400  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 176537
-exon list size: 209


building trellis

0.5    
0.9    
1.4    
1.9    
2.4    
2.8    
3.3    
3.8    
4.3    
4.7    
5.2    
5.7    
6.2    
6.6    
7.1    
7.6    
8.1    
8.5    
9.0    
9.5    
10.0    
10.4    
10.9    
11.4    
11.8    
12.3    
12.8    
13.3    
13.7    
14.2    
14.7    
15.2    
15.6    
16.1    
16.6    
17.1    
17.5    
18.0    
18.5    
19.0    
19.4    
19.9    
20.4    
20.9    
21.3    
21.8    
22.3    
22.7    
23.2    
23.7    
24.2    
24.6    
25.1    
25.6    
26.1    
26.5    
27.0    
27.5    
28.0    
28.4    
28.9    
29.4    
29.9    
30.3    
30.8    
31.3    
31.8    
32.2    
32.7    
33.2    
33.6    
34.1    
34.6    
35.1    
35.5    
36.0    
36.5    
37.0    
37.4    
37.9    
38.4    
38.9    
39.3    
39.8    
40.3    
40.8    
41.2    
41.7    
42.2    
42.7    
43.1    
43.6    
44.1    
44.5    
45.0    
45.5    
46.0    
46.4    
46.9    
47.4    
47.9    
48.3    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.7    
52.1    
52.6    
53.1    
53.6    
54.0    
54.5    
55.0    
55.5    
55.9    
56.4    
56.9    
57.3    
57.8    
58.3    
58.8    
59.2    
59.7    
60.2    
60.7    
61.1    
61.6    
62.1    
62.6    
63.0    
63.5    
64.0    
64.5    
64.9    
65.4    
65.9    
66.4    
66.8    
67.3    
67.8    
68.2    
68.7    
69.2    
69.7    
70.1    
70.6    
71.1    
71.6    
72.0    
72.5    
73.0    
73.5    
73.9    
74.4    
74.9    
75.4    
75.8    
76.3    
76.8    
77.3    
77.7    
78.2    
78.7    
79.1    
79.6    
80.1    
80.6    
81.0    
81.5    
82.0    
82.5    
82.9    
83.4    
83.9    
84.4    
84.8    
85.3    
85.8    
86.3    
86.7    
87.2    
87.7    
88.2    
88.6    
89.1    
89.6    
90.0    
90.5    
91.0    
91.5    
91.9    
92.4    
92.9    
93.4    
93.8    
94.3    
94.8    
95.3    
95.7    
96.2    
96.7    
97.2    
97.6    
98.1    
98.6    
99.1    
99.5    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 20657, rend_intergenic: 18813  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28160, rend_intergenic: 25433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79105, rend_intergenic: 76497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79967, rend_intergenic: 79268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82584, rend_intergenic: 80711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104224, rend_intergenic: 100400  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support