-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_5793268-5962881

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g11680.t1
Valid prediction for snap_scaffold_7-snap.1206-T1
Valid prediction for pasa_asmbl_49823.p1
Valid prediction for Augustus_model.g11688.t1
Valid prediction for GlimmerHMM_glimmerT_17462-T1
Valid prediction for Augustus_model.g11681.t1
Valid prediction for snap_scaffold_7-snap.1193-T1
Valid prediction for GlimmerHMM_glimmerT_17448-T1
Valid prediction for pasa_asmbl_49825.p1
Valid prediction for CodingQuarry_transcript_57516-T1
Valid prediction for GlimmerHMM_glimmerT_17450-T1
Valid prediction for CodingQuarry_transcript_57520-T1
Valid prediction for snap_scaffold_7-snap.1216-T1
Valid prediction for snap_scaffold_7-snap.1209-T1
Valid prediction for CodingQuarry_transcript_57515-T1
Valid prediction for snap_scaffold_7-snap.1213-T1
Valid prediction for GlimmerHMM_glimmerT_17465-T1
Valid prediction for snap_scaffold_7-snap.1223-T1
Valid prediction for snap_scaffold_7-snap.1192-T1
Valid prediction for snap_scaffold_7-snap.1208-T1
Valid prediction for GlimmerHMM_glimmerT_17455-T1
Valid prediction for snap_scaffold_7-snap.1220-T1
Valid prediction for CodingQuarry_transcript_57524-T1
Valid prediction for pasa_asmbl_49827.p1
Valid prediction for GlimmerHMM_glimmerT_17458-T1
Valid prediction for GlimmerHMM_glimmerT_17445-T1
Valid prediction for snap_scaffold_7-snap.1196-T1
Valid prediction for snap_scaffold_7-snap.1217-T1
Valid prediction for HiQ_model.g11686.t1
Valid prediction for HiQ_model.g11693.t1
Valid prediction for snap_scaffold_7-snap.1203-T1
Valid prediction for snap_scaffold_7-snap.1204-T1
Valid prediction for HiQ_model.g11692.t1
Valid prediction for snap_scaffold_7-snap.1218-T1
Valid prediction for GlimmerHMM_glimmerT_17459-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.1205-T1
Valid prediction for HiQ_model.g11684.t1
Valid prediction for GlimmerHMM_glimmerT_17452-T1
Valid prediction for snap_scaffold_7-snap.1219-T1
Couldn't classify 82619, 82954
Sorry, prediction pasa_asmbl_50896.p1 fails validation.
(CAG)	 GA	82619-82954	CT	AAC
Valid prediction for pasa_asmbl_50905.p1
Valid prediction for pasa_asmbl_50897.p1
Valid prediction for Augustus_model.g11687.t1
Valid prediction for HiQ_model.g11685.t1
Valid prediction for snap_scaffold_7-snap.1190-T1
Valid prediction for snap_scaffold_7-snap.1191-T1
Valid prediction for CodingQuarry_transcript_57517-T1
Valid prediction for snap_scaffold_7-snap.1210-T1
Valid prediction for GlimmerHMM_glimmerT_17464-T1
Valid prediction for snap_scaffold_7-snap.1222-T1
Valid prediction for GlimmerHMM_glimmerT_17457-T1
Valid prediction for GlimmerHMM_glimmerT_17446-T1
Valid prediction for GlimmerHMM_glimmerT_17463-T1
Valid prediction for HiQ_model.g11689.t1
Valid prediction for CodingQuarry_transcript_57518-T1
Valid prediction for pasa_asmbl_50895.p1
Valid prediction for snap_scaffold_7-snap.1199-T1
Valid prediction for Augustus_model.g11694.t1
Valid prediction for snap_scaffold_7-snap.1211-T1
Valid prediction for pasa_asmbl_50894.p1
Valid prediction for HiQ_model.g11690.t1
Valid prediction for snap_scaffold_7-snap.1197-T1
Valid prediction for snap_scaffold_7-snap.1198-T1
Valid prediction for GlimmerHMM_glimmerT_17449-T1
Valid prediction for Augustus_model.g11679.t1
Valid prediction for GlimmerHMM_glimmerT_17467-T1
Valid prediction for GlimmerHMM_glimmerT_17447-T1
Valid prediction for snap_scaffold_7-snap.1221-T1
Valid prediction for GlimmerHMM_glimmerT_17453-T1
Valid prediction for snap_scaffold_7-snap.1207-T1
Valid prediction for CodingQuarry_transcript_57521-T1
Valid prediction for snap_scaffold_7-snap.1202-T1
Valid prediction for Augustus_model.g11683.t1
Valid prediction for GlimmerHMM_glimmerT_17454-T1
Valid prediction for HiQ_model.g11682.t1
Valid prediction for CodingQuarry_transcript_57519-T1
Valid prediction for snap_scaffold_7-snap.1215-T1
Valid prediction for snap_scaffold_7-snap.1200-T1
Valid prediction for GlimmerHMM_glimmerT_17451-T1
Valid prediction for GlimmerHMM_glimmerT_17460-T1
Valid prediction for GlimmerHMM_glimmerT_17461-T1
Valid prediction for GlimmerHMM_glimmerT_17456-T1
Valid prediction for snap_scaffold_7-snap.1201-T1
Valid prediction for GlimmerHMM_glimmerT_17444-T1
Valid prediction for HiQ_model.g11691.t1
Valid prediction for snap_scaffold_7-snap.1214-T1
Valid prediction for CodingQuarry_transcript_57522-T1
Valid prediction for pasa_asmbl_50891.p1
Valid prediction for snap_scaffold_7-snap.1212-T1
Valid prediction for CodingQuarry_transcript_57523-T1
Valid prediction for snap_scaffold_7-snap.1195-T1
Valid prediction for GlimmerHMM_glimmerT_17466-T1
Valid prediction for snap_scaffold_7-snap.1194-T1
Valid prediction for pasa_asmbl_50901.p1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 30562, rend_intergenic: 26199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111097, rend_intergenic: 107360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153033, rend_intergenic: 149464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158174, rend_intergenic: 155918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 169614
-exon list size: 249


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.2    
3.6    
4.0    
4.4    
4.8    
5.2    
5.6    
6.0    
6.4    
6.8    
7.2    
7.6    
8.0    
8.4    
8.8    
9.2    
9.6    
10.0    
10.4    
10.8    
11.2    
11.6    
12.0    
12.4    
12.7    
13.1    
13.5    
13.9    
14.3    
14.7    
15.1    
15.5    
15.9    
16.3    
16.7    
17.1    
17.5    
17.9    
18.3    
18.7    
19.1    
19.5    
19.9    
20.3    
20.7    
21.1    
21.5    
21.9    
22.3    
22.7    
23.1    
23.5    
23.9    
24.3    
24.7    
25.1    
25.5    
25.9    
26.3    
26.7    
27.1    
27.5    
27.9    
28.3    
28.7    
29.1    
29.5    
29.9    
30.3    
30.7    
31.1    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.9    
34.3    
34.7    
35.1    
35.5    
35.9    
36.3    
36.7    
37.1    
37.5    
37.8    
38.2    
38.6    
39.0    
39.4    
39.8    
40.2    
40.6    
41.0    
41.4    
41.8    
42.2    
42.6    
43.0    
43.4    
43.8    
44.2    
44.6    
45.0    
45.4    
45.8    
46.2    
46.6    
47.0    
47.4    
47.8    
48.2    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.8    
52.2    
52.6    
53.0    
53.4    
53.8    
54.2    
54.6    
55.0    
55.4    
55.8    
56.2    
56.6    
57.0    
57.4    
57.8    
58.2    
58.6    
59.0    
59.4    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.5    
62.9    
63.3    
63.7    
64.1    
64.5    
64.9    
65.3    
65.7    
66.1    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
68.9    
69.3    
69.7    
70.1    
70.5    
70.9    
71.3    
71.7    
72.1    
72.5    
72.9    
73.3    
73.7    
74.1    
74.5    
74.9    
75.3    
75.7    
76.1    
76.5    
76.9    
77.3    
77.7    
78.1    
78.5    
78.9    
79.3    
79.7    
80.1    
80.5    
80.9    
81.3    
81.7    
82.1    
82.5    
82.9    
83.3    
83.7    
84.1    
84.5    
84.9    
85.3    
85.7    
86.1    
86.5    
86.9    
87.3    
87.6    
88.0    
88.4    
88.8    
89.2    
89.6    
90.0    
90.4    
90.8    
91.2    
91.6    
92.0    
92.4    
92.8    
93.2    
93.6    
94.0    
94.4    
94.8    
95.2    
95.6    
96.0    
96.4    
96.8    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 30562, rend_intergenic: 26199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111097, rend_intergenic: 107360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153033, rend_intergenic: 149464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158174, rend_intergenic: 155918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support