-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_4579044-4841864

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_17313-T1
Valid prediction for GlimmerHMM_glimmerT_17340-T1
Valid prediction for GlimmerHMM_glimmerT_17325-T1
Valid prediction for GlimmerHMM_glimmerT_17315-T1
Valid prediction for snap_scaffold_7-snap.1049-T1
Valid prediction for Augustus_model.g11581.t1
Valid prediction for snap_scaffold_7-snap.1017-T1
Valid prediction for snap_scaffold_7-snap.1040-T1
Valid prediction for Augustus_model.g11572.t1
Valid prediction for GlimmerHMM_glimmerT_17330-T1
Valid prediction for snap_scaffold_7-snap.1024-T1
Valid prediction for GlimmerHMM_glimmerT_17329-T1
Valid prediction for Augustus_model.g11576.t1
Valid prediction for GlimmerHMM_glimmerT_17322-T1
Valid prediction for snap_scaffold_7-snap.1047-T1
Valid prediction for GlimmerHMM_glimmerT_17314-T1
Valid prediction for GlimmerHMM_glimmerT_17326-T1
Valid prediction for snap_scaffold_7-snap.1027-T1
Valid prediction for snap_scaffold_7-snap.1035-T1
Valid prediction for GlimmerHMM_glimmerT_17335-T1
Valid prediction for GlimmerHMM_glimmerT_17333-T1
Valid prediction for snap_scaffold_7-snap.1041-T1
Valid prediction for snap_scaffold_7-snap.1036-T1
Valid prediction for GlimmerHMM_glimmerT_17318-T1
Valid prediction for GlimmerHMM_glimmerT_17342-T1
Valid prediction for Augustus_model.g11588.t1
Valid prediction for snap_scaffold_7-snap.1034-T1
Valid prediction for GlimmerHMM_glimmerT_17331-T1
Valid prediction for Augustus_model.g11590.t1
Valid prediction for GlimmerHMM_glimmerT_17336-T1
Valid prediction for Augustus_model.g11575.t1
Valid prediction for Augustus_model.g11584.t1
Valid prediction for Augustus_model.g11594.t1
Valid prediction for snap_scaffold_7-snap.1043-T1
Valid prediction for Augustus_model.g11585.t1
Valid prediction for Augustus_model.g11579.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.1026-T1
Valid prediction for Augustus_model.g11578.t1
Valid prediction for Augustus_model.g11571.t1
Valid prediction for GlimmerHMM_glimmerT_17328-T1
Valid prediction for snap_scaffold_7-snap.1044-T1
Valid prediction for snap_scaffold_7-snap.1048-T1
Valid prediction for snap_scaffold_7-snap.1019-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g11586.t1
Valid prediction for snap_scaffold_7-snap.1045-T1
Valid prediction for GlimmerHMM_glimmerT_17320-T1
Valid prediction for Augustus_model.g11597.t1
Valid prediction for GlimmerHMM_glimmerT_17327-T1
Valid prediction for GlimmerHMM_glimmerT_17343-T1
Valid prediction for GlimmerHMM_glimmerT_17319-T1
Valid prediction for GlimmerHMM_glimmerT_17341-T1
Valid prediction for snap_scaffold_7-snap.1051-T1
Valid prediction for GlimmerHMM_glimmerT_17324-T1
Valid prediction for Augustus_model.g11580.t1
Valid prediction for snap_scaffold_7-snap.1031-T1
Valid prediction for GlimmerHMM_glimmerT_17317-T1
Valid prediction for GlimmerHMM_glimmerT_17339-T1
Valid prediction for snap_scaffold_7-snap.1037-T1
Valid prediction for snap_scaffold_7-snap.1030-T1
Valid prediction for snap_scaffold_7-snap.1018-T1
Valid prediction for Augustus_model.g11573.t1
Valid prediction for GlimmerHMM_glimmerT_17337-T1
Valid prediction for Augustus_model.g11583.t1
Valid prediction for snap_scaffold_7-snap.1050-T1
Valid prediction for Augustus_model.g11596.t1
Valid prediction for snap_scaffold_7-snap.1046-T1
Valid prediction for Augustus_model.g11582.t1
Valid prediction for Augustus_model.g11595.t1
Valid prediction for snap_scaffold_7-snap.1020-T1
Valid prediction for GlimmerHMM_glimmerT_17316-T1
Valid prediction for snap_scaffold_7-snap.1038-T1
Valid prediction for Augustus_model.g11592.t1
Valid prediction for snap_scaffold_7-snap.1023-T1
Valid prediction for snap_scaffold_7-snap.1039-T1
Valid prediction for GlimmerHMM_glimmerT_17345-T1
Valid prediction for snap_scaffold_7-snap.1028-T1
Valid prediction for snap_scaffold_7-snap.1025-T1
Valid prediction for Augustus_model.g11589.t1
Valid prediction for snap_scaffold_7-snap.1042-T1
Valid prediction for snap_scaffold_7-snap.1029-T1
Valid prediction for GlimmerHMM_glimmerT_17344-T1
Valid prediction for Augustus_model.g11593.t1
Valid prediction for Augustus_model.g11574.t1
Valid prediction for Augustus_model.g11587.t1
Valid prediction for GlimmerHMM_glimmerT_17332-T1
Valid prediction for GlimmerHMM_glimmerT_17321-T1
Valid prediction for GlimmerHMM_glimmerT_17334-T1
Valid prediction for snap_scaffold_7-snap.1021-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.1033-T1
Valid prediction for snap_scaffold_7-snap.1022-T1
Valid prediction for GlimmerHMM_glimmerT_17338-T1
Valid prediction for Augustus_model.g11577.t1
Valid prediction for GlimmerHMM_glimmerT_17323-T1
Valid prediction for snap_scaffold_7-snap.1032-T1
Valid prediction for Augustus_model.g11591.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 262821
-exon list size: 304


building trellis

0.3    
0.7    
1.0    
1.3    
1.6    
2.0    
2.3    
2.6    
2.9    
3.3    
3.6    
3.9    
4.2    
4.6    
4.9    
5.2    
5.6    
5.9    
6.2    
6.5    
6.9    
7.2    
7.5    
7.8    
8.2    
8.5    
8.8    
9.2    
9.5    
9.8    
10.1    
10.5    
10.8    
11.1    
11.4    
11.8    
12.1    
12.4    
12.7    
13.1    
13.4    
13.7    
14.1    
14.4    
14.7    
15.0    
15.4    
15.7    
16.0    
16.3    
16.7    
17.0    
17.3    
17.6    
18.0    
18.3    
18.6    
19.0    
19.3    
19.6    
19.9    
20.3    
20.6    
20.9    
21.2    
21.6    
21.9    
22.2    
22.5    
22.9    
23.2    
23.5    
23.9    
24.2    
24.5    
24.8    
25.2    
25.5    
25.8    
26.1    
26.5    
26.8    
27.1    
27.5    
27.8    
28.1    
28.4    
28.8    
29.1    
29.4    
29.7    
30.1    
30.4    
30.7    
31.0    
31.4    
31.7    
32.0    
32.4    
32.7    
33.0    
33.3    
33.7    
34.0    
34.3    
34.6    
35.0    
35.3    
35.6    
35.9    
36.3    
36.6    
36.9    
37.3    
37.6    
37.9    
38.2    
38.6    
38.9    
39.2    
39.5    
39.9    
40.2    
40.5    
40.8    
41.2    
41.5    
41.8    
42.2    
42.5    
42.8    
43.1    
43.5    
43.8    
44.1    
44.4    
44.8    
45.1    
45.4    
45.8    
46.1    
46.4    
46.7    
47.1    
47.4    
47.7    
48.0    
48.4    
48.7    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.3    
51.6    
52.0    
52.3    
52.6    
52.9    
53.3    
53.6    
53.9    
54.2    
54.6    
54.9    
55.2    
55.6    
55.9    
56.2    
56.5    
56.9    
57.2    
57.5    
57.8    
58.2    
58.5    
58.8    
59.2    
59.5    
59.8    
60.1    
60.5    
60.8    
61.1    
61.4    
61.8    
62.1    
62.4    
62.7    
63.1    
63.4    
63.7    
64.1    
64.4    
64.7    
65.0    
65.4    
65.7    
66.0    
66.3    
66.7    
67.0    
67.3    
67.6    
68.0    
68.3    
68.6    
69.0    
69.3    
69.6    
69.9    
70.3    
70.6    
70.9    
71.2    
71.6    
71.9    
72.2    
72.5    
72.9    
73.2    
73.5    
73.9    
74.2    
74.5    
74.8    
75.2    
75.5    
75.8    
76.1    
76.5    
76.8    
77.1    
77.5    
77.8    
78.1    
78.4    
78.8    
79.1    
79.4    
79.7    
80.1    
80.4    
80.7    
81.0    
81.4    
81.7    
82.0    
82.4    
82.7    
83.0    
83.3    
83.7    
84.0    
84.3    
84.6    
85.0    
85.3    
85.6    
85.9    
86.3    
86.6    
86.9    
87.3    
87.6    
87.9    
88.2    
88.6    
88.9    
89.2    
89.5    
89.9    
90.2    
90.5    
90.8    
91.2    
91.5    
91.8    
92.2    
92.5    
92.8    
93.1    
93.5    
93.8    
94.1    
94.4    
94.8    
95.1    
95.4    
95.8    
96.1    
96.4    
96.7    
97.1    
97.4    
97.7    
98.0    
98.4    
98.7    
99.0    
99.3    
99.7    
-found 36 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 35 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 235013 - 262821
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 235013 - 255280
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 235013 - 247546