-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_2746217-2933158

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g11404.t1
Valid prediction for GlimmerHMM_glimmerT_17091-T1
Valid prediction for GlimmerHMM_glimmerT_17095-T1
Valid prediction for Augustus_model.g11406.t1
Valid prediction for Augustus_model.g11401.t1
Valid prediction for GlimmerHMM_glimmerT_17078-T1
Valid prediction for snap_scaffold_7-snap.678-T1
Valid prediction for GlimmerHMM_glimmerT_17086-T1
Valid prediction for GlimmerHMM_glimmerT_17097-T1
Valid prediction for snap_scaffold_7-snap.701-T1
Valid prediction for GlimmerHMM_glimmerT_17093-T1
Valid prediction for snap_scaffold_7-snap.668-T1
Valid prediction for snap_scaffold_7-snap.677-T1
Couldn't classify 61098, 61326
Sorry, prediction pasa_asmbl_49670.p1 fails validation.
(ACG)	 AG	61098-61326	GT	TGG
(GAG)	 AG	62012-62068	GT	AGG
(TGG)	 AG	62449-63017	GG	AGG
-recovered pasa_asmbl_49670.p1, terminal, 62449, 63017
-recovered pasa_asmbl_49670.p1, internal, 61098, 61326
-recovered pasa_asmbl_49670.p1, internal, 62012, 62068
Valid prediction for snap_scaffold_7-snap.691-T1
Valid prediction for snap_scaffold_7-snap.700-T1
Valid prediction for snap_scaffold_7-snap.699-T1
Valid prediction for snap_scaffold_7-snap.695-T1
Valid prediction for Augustus_model.g11396.t1
Valid prediction for snap_scaffold_7-snap.693-T1
Valid prediction for GlimmerHMM_glimmerT_17094-T1
Valid prediction for Augustus_model.g11392.t1
Valid prediction for snap_scaffold_7-snap.682-T1
Valid prediction for GlimmerHMM_glimmerT_17079-T1
Valid prediction for Augustus_model.g11391.t1
Valid prediction for snap_scaffold_7-snap.680-T1
Valid prediction for snap_scaffold_7-snap.689-T1
Valid prediction for snap_scaffold_7-snap.666-T1
Valid prediction for GlimmerHMM_glimmerT_17090-T1
Valid prediction for Augustus_model.g11395.t1
Valid prediction for snap_scaffold_7-snap.684-T1
Valid prediction for Augustus_model.g11407.t1
Valid prediction for snap_scaffold_7-snap.654-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.676-T1
Valid prediction for GlimmerHMM_glimmerT_17077-T1
Valid prediction for snap_scaffold_7-snap.687-T1
Valid prediction for snap_scaffold_7-snap.673-T1
Valid prediction for snap_scaffold_7-snap.653-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.702-T1
Valid prediction for pasa_asmbl_50771.p3
Valid prediction for snap_scaffold_7-snap.683-T1
Valid prediction for snap_scaffold_7-snap.690-T1
Valid prediction for snap_scaffold_7-snap.663-T1
Valid prediction for GlimmerHMM_glimmerT_17092-T1
Valid prediction for CodingQuarry_transcript_57454-T1
Valid prediction for GlimmerHMM_glimmerT_17098-T1
Valid prediction for Augustus_model.g11398.t1
Valid prediction for snap_scaffold_7-snap.661-T1
Valid prediction for snap_scaffold_7-snap.664-T1
Valid prediction for snap_scaffold_7-snap.694-T1
Valid prediction for snap_scaffold_7-snap.660-T1
Valid prediction for snap_scaffold_7-snap.698-T1
Valid prediction for Augustus_model.g11405.t1
Valid prediction for Augustus_model.g11389.t1
Valid prediction for GlimmerHMM_glimmerT_17081-T1
Valid prediction for snap_scaffold_7-snap.692-T1
Valid prediction for GlimmerHMM_glimmerT_17087-T1
Valid prediction for GlimmerHMM_glimmerT_17088-T1
Valid prediction for snap_scaffold_7-snap.656-T1
Valid prediction for Augustus_model.g11388.t1
Valid prediction for GlimmerHMM_glimmerT_17096-T1
Valid prediction for GlimmerHMM_glimmerT_17082-T1
Valid prediction for snap_scaffold_7-snap.674-T1
Valid prediction for snap_scaffold_7-snap.659-T1
Valid prediction for GlimmerHMM_glimmerT_17085-T1
Valid prediction for pasa_asmbl_50770.p1
Valid prediction for Augustus_model.g11403.t1
Valid prediction for GlimmerHMM_glimmerT_17083-T1
Valid prediction for snap_scaffold_7-snap.657-T1
Valid prediction for snap_scaffold_7-snap.685-T1
Valid prediction for Augustus_model.g11400.t1
Valid prediction for snap_scaffold_7-snap.696-T1
Valid prediction for CodingQuarry_transcript_57453-T1
Valid prediction for snap_scaffold_7-snap.697-T1
Valid prediction for snap_scaffold_7-snap.669-T1
Valid prediction for snap_scaffold_7-snap.658-T1
Valid prediction for snap_scaffold_7-snap.662-T1
Valid prediction for snap_scaffold_7-snap.679-T1
Valid prediction for snap_scaffold_7-snap.672-T1
Valid prediction for HiQ_model.g11394.t1
Valid prediction for GlimmerHMM_glimmerT_17089-T1
Valid prediction for snap_scaffold_7-snap.675-T1
Valid prediction for Augustus_model.g11393.t1
Valid prediction for snap_scaffold_7-snap.667-T1
Valid prediction for GlimmerHMM_glimmerT_17076-T1
Valid prediction for GlimmerHMM_glimmerT_17075-T1
Valid prediction for snap_scaffold_7-snap.686-T1
Valid prediction for snap_scaffold_7-snap.652-T1
Valid prediction for snap_scaffold_7-snap.670-T1
Valid prediction for snap_scaffold_7-snap.681-T1
Valid prediction for Augustus_model.g11390.t1
Valid prediction for GlimmerHMM_glimmerT_17080-T1
Valid prediction for HiQ_model.g11402.t1
Valid prediction for Augustus_model.g11399.t1
Valid prediction for snap_scaffold_7-snap.688-T1
Valid prediction for snap_scaffold_7-snap.651-T1
Valid prediction for Augustus_model.g11397.t1
Valid prediction for snap_scaffold_7-snap.655-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.671-T1
Valid prediction for GlimmerHMM_glimmerT_17084-T1
Valid prediction for snap_scaffold_7-snap.665-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 62602, rend_intergenic: 60800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75725, rend_intergenic: 66498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98201, rend_intergenic: 95075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104756, rend_intergenic: 99576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111308, rend_intergenic: 109188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113477, rend_intergenic: 111319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120921, rend_intergenic: 113680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139448, rend_intergenic: 130077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143652, rend_intergenic: 139579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150307, rend_intergenic: 146289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152733, rend_intergenic: 151613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155088, rend_intergenic: 152746  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158613, rend_intergenic: 155176  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164416, rend_intergenic: 161086  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170885, rend_intergenic: 165271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 186942
-exon list size: 338


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.6    
2.9    
3.2    
3.5    
3.8    
4.1    
4.4    
4.7    
5.0    
5.3    
5.6    
5.9    
6.2    
6.5    
6.8    
7.1    
7.4    
7.6    
7.9    
8.2    
8.5    
8.8    
9.1    
9.4    
9.7    
10.0    
10.3    
10.6    
10.9    
11.2    
11.5    
11.8    
12.1    
12.4    
12.6    
12.9    
13.2    
13.5    
13.8    
14.1    
14.4    
14.7    
15.0    
15.3    
15.6    
15.9    
16.2    
16.5    
16.8    
17.1    
17.4    
17.6    
17.9    
18.2    
18.5    
18.8    
19.1    
19.4    
19.7    
20.0    
20.3    
20.6    
20.9    
21.2    
21.5    
21.8    
22.1    
22.4    
22.6    
22.9    
23.2    
23.5    
23.8    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.2    
26.5    
26.8    
27.1    
27.4    
27.6    
27.9    
28.2    
28.5    
28.8    
29.1    
29.4    
29.7    
30.0    
30.3    
30.6    
30.9    
31.2    
31.5    
31.8    
32.1    
32.4    
32.6    
32.9    
33.2    
33.5    
33.8    
34.1    
34.4    
34.7    
35.0    
35.3    
35.6    
35.9    
36.2    
36.5    
36.8    
37.1    
37.4    
37.6    
37.9    
38.2    
38.5    
38.8    
39.1    
39.4    
39.7    
40.0    
40.3    
40.6    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.6    
42.9    
43.2    
43.5    
43.8    
44.1    
44.4    
44.7    
45.0    
45.3    
45.6    
45.9    
46.2    
46.5    
46.8    
47.1    
47.4    
47.6    
47.9    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.1    
52.4    
52.6    
52.9    
53.2    
53.5    
53.8    
54.1    
54.4    
54.7    
55.0    
55.3    
55.6    
55.9    
56.2    
56.5    
56.8    
57.1    
57.4    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.4    
59.7    
60.0    
60.3    
60.6    
60.9    
61.2    
61.5    
61.8    
62.1    
62.4    
62.6    
62.9    
63.2    
63.5    
63.8    
64.1    
64.4    
64.7    
65.0    
65.3    
65.6    
65.9    
66.2    
66.5    
66.8    
67.1    
67.4    
67.6    
67.9    
68.2    
68.5    
68.8    
69.1    
69.4    
69.7    
70.0    
70.3    
70.6    
70.9    
71.2    
71.5    
71.8    
72.1    
72.4    
72.6    
72.9    
73.2    
73.5    
73.8    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.2    
76.5    
76.8    
77.1    
77.4    
77.6    
77.9    
78.2    
78.5    
78.8    
79.1    
79.4    
79.7    
80.0    
80.3    
80.6    
80.9    
81.2    
81.5    
81.8    
82.1    
82.4    
82.6    
82.9    
83.2    
83.5    
83.8    
84.1    
84.4    
84.7    
85.0    
85.3    
85.6    
85.9    
86.2    
86.5    
86.8    
87.1    
87.4    
87.6    
87.9    
88.2    
88.5    
88.8    
89.1    
89.4    
89.7    
90.0    
90.3    
90.6    
90.9    
91.2    
91.5    
91.8    
92.1    
92.4    
92.6    
92.9    
93.2    
93.5    
93.8    
94.1    
94.4    
94.7    
95.0    
95.3    
95.6    
95.9    
96.2    
96.5    
96.8    
97.1    
97.4    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 62602, rend_intergenic: 60800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75725, rend_intergenic: 66498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98201, rend_intergenic: 95075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104756, rend_intergenic: 99576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111308, rend_intergenic: 109188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113477, rend_intergenic: 111319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120921, rend_intergenic: 113680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139448, rend_intergenic: 130077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143652, rend_intergenic: 139579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150307, rend_intergenic: 146289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152733, rend_intergenic: 151613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155088, rend_intergenic: 152746  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158613, rend_intergenic: 155176  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164416, rend_intergenic: 161086  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170885, rend_intergenic: 165271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support