-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_1899616-2063872

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_7-snap.452-T1
Valid prediction for GlimmerHMM_glimmerT_16964-T1
Valid prediction for Augustus_model.g11318.t1
Valid prediction for snap_scaffold_7-snap.463-T1
Valid prediction for GlimmerHMM_glimmerT_16950-T1
Valid prediction for snap_scaffold_7-snap.455-T1
Valid prediction for snap_scaffold_7-snap.453-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.470-T1
Valid prediction for GlimmerHMM_glimmerT_16970-T1
Valid prediction for GlimmerHMM_glimmerT_16966-T1
Valid prediction for GlimmerHMM_glimmerT_16962-T1
Valid prediction for snap_scaffold_7-snap.477-T1
Valid prediction for snap_scaffold_7-snap.467-T1
Valid prediction for snap_scaffold_7-snap.451-T1
Valid prediction for GlimmerHMM_glimmerT_16953-T1
Valid prediction for GlimmerHMM_glimmerT_16959-T1
Valid prediction for snap_scaffold_7-snap.457-T1
Valid prediction for snap_scaffold_7-snap.474-T1
Valid prediction for Augustus_model.g11321.t1
Valid prediction for GlimmerHMM_glimmerT_16973-T1
Valid prediction for snap_scaffold_7-snap.448-T1
Valid prediction for GlimmerHMM_glimmerT_16956-T1
Valid prediction for Augustus_model.g11316.t1
Valid prediction for snap_scaffold_7-snap.478-T1
Valid prediction for Augustus_model.g11319.t1
Valid prediction for Augustus_model.g11320.t1
Valid prediction for GlimmerHMM_glimmerT_16957-T1
Valid prediction for snap_scaffold_7-snap.476-T1
Valid prediction for snap_scaffold_7-snap.449-T1
Valid prediction for snap_scaffold_7-snap.472-T1
Valid prediction for GlimmerHMM_glimmerT_16960-T1
Valid prediction for snap_scaffold_7-snap.464-T1
Valid prediction for GlimmerHMM_glimmerT_16951-T1
Valid prediction for snap_scaffold_7-snap.450-T1
Valid prediction for snap_scaffold_7-snap.461-T1
Valid prediction for GlimmerHMM_glimmerT_16968-T1
Valid prediction for GlimmerHMM_glimmerT_16949-T1
Valid prediction for snap_scaffold_7-snap.465-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.460-T1
Valid prediction for snap_scaffold_7-snap.466-T1
Valid prediction for GlimmerHMM_glimmerT_16955-T1
Valid prediction for snap_scaffold_7-snap.482-T1
Valid prediction for snap_scaffold_7-snap.454-T1
Valid prediction for snap_scaffold_7-snap.458-T1
Valid prediction for GlimmerHMM_glimmerT_16954-T1
Valid prediction for snap_scaffold_7-snap.471-T1
Valid prediction for GlimmerHMM_glimmerT_16952-T1
Valid prediction for GlimmerHMM_glimmerT_16963-T1
Valid prediction for GlimmerHMM_glimmerT_16961-T1
Valid prediction for Augustus_model.g11317.t1
Valid prediction for snap_scaffold_7-snap.484-T1
Valid prediction for GlimmerHMM_glimmerT_16967-T1
Valid prediction for snap_scaffold_7-snap.475-T1
Valid prediction for snap_scaffold_7-snap.483-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.469-T1
Valid prediction for snap_scaffold_7-snap.480-T1
Valid prediction for snap_scaffold_7-snap.459-T1
Valid prediction for snap_scaffold_7-snap.447-T1
Valid prediction for GlimmerHMM_glimmerT_16969-T1
Valid prediction for GlimmerHMM_glimmerT_16974-T1
Valid prediction for GlimmerHMM_glimmerT_16975-T1
Valid prediction for snap_scaffold_7-snap.456-T1
Valid prediction for GlimmerHMM_glimmerT_16965-T1
Valid prediction for snap_scaffold_7-snap.473-T1
Valid prediction for snap_scaffold_7-snap.479-T1
Valid prediction for GlimmerHMM_glimmerT_16972-T1
Valid prediction for snap_scaffold_7-snap.462-T1
Valid prediction for Augustus_model.g11315.t1
Valid prediction for Augustus_model.g11322.t1
Valid prediction for snap_scaffold_7-snap.468-T1
Valid prediction for GlimmerHMM_glimmerT_16971-T1
Valid prediction for snap_scaffold_7-snap.446-T1
Valid prediction for GlimmerHMM_glimmerT_16958-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17721, rend_intergenic: 15530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56023, rend_intergenic: 53028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80403, rend_intergenic: 76136  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93668, rend_intergenic: 90280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110621, rend_intergenic: 105348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115088, rend_intergenic: 111329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120447, rend_intergenic: 115860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136172, rend_intergenic: 130900  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137678, rend_intergenic: 136567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151731, rend_intergenic: 148919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 164257
-exon list size: 237


building trellis

0.4    
0.8    
1.3    
1.7    
2.1    
2.5    
2.9    
3.3    
3.8    
4.2    
4.6    
5.0    
5.4    
5.9    
6.3    
6.7    
7.1    
7.5    
7.9    
8.4    
8.8    
9.2    
9.6    
10.0    
10.5    
10.9    
11.3    
11.7    
12.1    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
15.1    
15.5    
15.9    
16.3    
16.7    
17.2    
17.6    
18.0    
18.4    
18.8    
19.2    
19.7    
20.1    
20.5    
20.9    
21.3    
21.8    
22.2    
22.6    
23.0    
23.4    
23.8    
24.3    
24.7    
25.1    
25.5    
25.9    
26.4    
26.8    
27.2    
27.6    
28.0    
28.5    
28.9    
29.3    
29.7    
30.1    
30.5    
31.0    
31.4    
31.8    
32.2    
32.6    
33.1    
33.5    
33.9    
34.3    
34.7    
35.1    
35.6    
36.0    
36.4    
36.8    
37.2    
37.7    
38.1    
38.5    
38.9    
39.3    
39.7    
40.2    
40.6    
41.0    
41.4    
41.8    
42.3    
42.7    
43.1    
43.5    
43.9    
44.4    
44.8    
45.2    
45.6    
46.0    
46.4    
46.9    
47.3    
47.7    
48.1    
48.5    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.5    
51.9    
52.3    
52.7    
53.1    
53.6    
54.0    
54.4    
54.8    
55.2    
55.6    
56.1    
56.5    
56.9    
57.3    
57.7    
58.2    
58.6    
59.0    
59.4    
59.8    
60.3    
60.7    
61.1    
61.5    
61.9    
62.3    
62.8    
63.2    
63.6    
64.0    
64.4    
64.9    
65.3    
65.7    
66.1    
66.5    
66.9    
67.4    
67.8    
68.2    
68.6    
69.0    
69.5    
69.9    
70.3    
70.7    
71.1    
71.5    
72.0    
72.4    
72.8    
73.2    
73.6    
74.1    
74.5    
74.9    
75.3    
75.7    
76.2    
76.6    
77.0    
77.4    
77.8    
78.2    
78.7    
79.1    
79.5    
79.9    
80.3    
80.8    
81.2    
81.6    
82.0    
82.4    
82.8    
83.3    
83.7    
84.1    
84.5    
84.9    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.9    
88.3    
88.7    
89.1    
89.5    
90.0    
90.4    
90.8    
91.2    
91.6    
92.1    
92.5    
92.9    
93.3    
93.7    
94.1    
94.6    
95.0    
95.4    
95.8    
96.2    
96.7    
97.1    
97.5    
97.9    
98.3    
98.7    
99.2    
99.6    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 17721, rend_intergenic: 15530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56023, rend_intergenic: 53028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80403, rend_intergenic: 76136  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93668, rend_intergenic: 90280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110621, rend_intergenic: 105348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115088, rend_intergenic: 111329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120447, rend_intergenic: 115860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136172, rend_intergenic: 130900  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137678, rend_intergenic: 136567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151731, rend_intergenic: 148919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15580
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15384
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11075
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support