-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_18975965-19028566

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_19075-T1
Valid prediction for GlimmerHMM_glimmerT_19076-T1
Valid prediction for snap_scaffold_7-snap.3673-T1
Valid prediction for snap_scaffold_7-snap.3674-T1
Valid prediction for snap_scaffold_7-snap.3676-T1
Valid prediction for snap_scaffold_7-snap.3672-T1
Valid prediction for GlimmerHMM_glimmerT_19079-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_19078-T1
Couldn't classify 43287, 43372
Sorry, prediction pasa_asmbl_51512.p1 fails validation.
(ATG)	 TT	39498-39583	GT	TGG
(GGG)	 AG	41472-41583	GT	AGG
(GTA)	 AG	43012-43165	GT	GGG
(ACC)	 AG	43287-43372	GA	GAG
-recovered pasa_asmbl_51512.p1, initial, 39498, 39583
-recovered pasa_asmbl_51512.p1, internal, 41472, 41583
-recovered pasa_asmbl_51512.p1, internal, 43012, 43165
Valid prediction for snap_scaffold_7-snap.3677-T1
Couldn't classify 2309, 2479
Sorry, prediction snap_scaffold_7-snap.3678-T1 fails validation.
(GGC)	 AG	2309-2479	GT	TGG
(AGG)	 AG	3228-3275	TA	AAT
-recovered snap_scaffold_7-snap.3678-T1, terminal, 3228, 3275
-recovered snap_scaffold_7-snap.3678-T1, internal, 2309, 2479
Couldn't classify 19844, 20014
Sorry, prediction Augustus_model.g12771.t1 fails validation.
(TTG)	 AG	19844-20014	GT	AGG
(ATG)	 AG	22062-22267	CT	GAC
-recovered Augustus_model.g12771.t1, terminal, 22062, 22267
-recovered Augustus_model.g12771.t1, internal, 19844, 20014
Couldn't classify 46610, 46750
Couldn't classify 50812, 50960
Sorry, prediction pasa_asmbl_51511.p1 fails validation.
(TGC)	 AC	46610-46750	GT	AGG
(GTG)	 AG	47145-47247	GC	AGG
(ACC)	 AG	47410-47608	GT	AGG
(CTC)	 AG	47746-47846	GT	CGG
(GTC)	 AG	50812-50960	CA	GCC
-recovered pasa_asmbl_51511.p1, internal, 47145, 47247
-recovered pasa_asmbl_51511.p1, internal, 47410, 47608
-recovered pasa_asmbl_51511.p1, internal, 47746, 47846
Valid prediction for GlimmerHMM_glimmerT_19077-T1
Valid prediction for snap_scaffold_7-snap.3675-T1
Valid prediction for Augustus_model.g12770.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 52602
-exon list size: 49


building trellis

2.0    
3.9    
5.9    
7.8    
9.8    
11.8    
13.7    
15.7    
17.6    
19.6    
21.6    
23.5    
25.5    
27.5    
29.4    
31.4    
33.3    
35.3    
37.3    
39.2    
41.2    
43.1    
45.1    
47.1    
49.0    
51.0    
52.9    
54.9    
56.9    
58.8    
60.8    
62.7    
64.7    
66.7    
68.6    
70.6    
72.5    
74.5    
76.5    
78.4    
80.4    
82.4    
84.3    
86.3    
88.2    
90.2    
92.2    
94.1    
96.1    
98.0    
-found 6 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support