-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_18541497-18665729

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 45310, 45532
Sorry, prediction pasa_asmbl_50527.p1 fails validation.
(ATG)	 AC	27520-27528	GT	AGG
(GTG)	 AG	29037-29199	GT	AGG
(ATC)	 AG	30770-30861	GT	AGG
(GAT)	 AG	31945-32025	GT	GGG
(CAA)	 AG	32688-32747	GT	AGG
(GTT)	 AG	33295-33446	GT	AAG
(GCC)	 AG	33589-33682	GT	CTG
(ATT)	 AG	36589-36678	GT	GGG
(CTT)	 AG	38241-38407	GT	AGG
(AGC)	 AG	38694-38823	GT	AGG
(GTT)	 AG	39240-39344	GT	AGG
(TAC)	 AG	39727-39833	GT	TTG
(CTG)	 AG	40165-40319	GT	CGG
(GTT)	 AG	40418-40528	GT	TGG
(AGA)	 AG	41550-41652	GT	AGG
(CCC)	 AG	43094-43136	GT	GGG
(GTT)	 AG	43260-43302	GT	AGG
(TGG)	 AG	44161-44299	GT	GGG
(CTC)	 AG	45310-45532	GG	AAG
-recovered pasa_asmbl_50527.p1, initial, 27520, 27528
-recovered pasa_asmbl_50527.p1, internal, 29037, 29199
-recovered pasa_asmbl_50527.p1, internal, 30770, 30861
-recovered pasa_asmbl_50527.p1, internal, 31945, 32025
-recovered pasa_asmbl_50527.p1, internal, 32688, 32747
-recovered pasa_asmbl_50527.p1, internal, 33295, 33446
-recovered pasa_asmbl_50527.p1, internal, 33589, 33682
-recovered pasa_asmbl_50527.p1, internal, 36589, 36678
-recovered pasa_asmbl_50527.p1, internal, 38241, 38407
-recovered pasa_asmbl_50527.p1, internal, 38694, 38823
-recovered pasa_asmbl_50527.p1, internal, 39240, 39344
-recovered pasa_asmbl_50527.p1, internal, 39727, 39833
-recovered pasa_asmbl_50527.p1, internal, 40165, 40319
-recovered pasa_asmbl_50527.p1, internal, 40418, 40528
-recovered pasa_asmbl_50527.p1, internal, 41550, 41652
-recovered pasa_asmbl_50527.p1, internal, 43094, 43136
-recovered pasa_asmbl_50527.p1, internal, 43260, 43302
-recovered pasa_asmbl_50527.p1, internal, 44161, 44299
Valid prediction for HiQ_model.g12742.t1
Valid prediction for snap_scaffold_7-snap.3581-T1
Valid prediction for snap_scaffold_7-snap.3602-T1
Valid prediction for GlimmerHMM_glimmerT_19019-T1
Valid prediction for snap_scaffold_7-snap.3594-T1
Valid prediction for snap_scaffold_7-snap.3604-T1
Valid prediction for snap_scaffold_7-snap.3595-T1
Valid prediction for GlimmerHMM_glimmerT_19021-T1
Valid prediction for snap_scaffold_7-snap.3588-T1
Valid prediction for Augustus_model.g12744.t1
Valid prediction for GlimmerHMM_glimmerT_19026-T1
Valid prediction for GlimmerHMM_glimmerT_19022-T1
Valid prediction for snap_scaffold_7-snap.3605-T1
Valid prediction for GlimmerHMM_glimmerT_19031-T1
Valid prediction for snap_scaffold_7-snap.3603-T1
Valid prediction for snap_scaffold_7-snap.3582-T1
Valid prediction for snap_scaffold_7-snap.3579-T1
Valid prediction for snap_scaffold_7-snap.3599-T1
Valid prediction for GlimmerHMM_glimmerT_19024-T1
Valid prediction for snap_scaffold_7-snap.3591-T1
Valid prediction for CodingQuarry_transcript_57763-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_51481.p1
Valid prediction for Augustus_model.g12748.t1
Couldn't classify 36433, 36556
Couldn't classify 38089, 38238
Sorry, prediction pasa_asmbl_51524.p1 fails validation.
(CAA)	 CC	36433-36556	GT	TGG
(GCT)	 AG	37581-37666	GT	AGG
(ATC)	 AG	38089-38238	AA	CCA
-recovered pasa_asmbl_51524.p1, internal, 37581, 37666
Valid prediction for GlimmerHMM_glimmerT_19016-T1
Valid prediction for snap_scaffold_7-snap.3597-T1
Valid prediction for CodingQuarry_transcript_57771-T1
Valid prediction for GlimmerHMM_glimmerT_19023-T1
Valid prediction for snap_scaffold_7-snap.3580-T1
Valid prediction for GlimmerHMM_glimmerT_19028-T1
Valid prediction for Augustus_model.g12743.t1
Valid prediction for Augustus_model.g12746.t1
Valid prediction for snap_scaffold_7-snap.3592-T1
Valid prediction for GlimmerHMM_glimmerT_19018-T1
Valid prediction for snap_scaffold_7-snap.3590-T1
Valid prediction for Augustus_model.g12745.t1
Valid prediction for Augustus_model.g12747.t1
Valid prediction for snap_scaffold_7-snap.3589-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.3578-T1
Valid prediction for snap_scaffold_7-snap.3593-T1
Valid prediction for CodingQuarry_transcript_57767-T1
Valid prediction for pasa_asmbl_51488.p1
Couldn't classify 57432, 57540
Sorry, prediction pasa_asmbl_51482.p1 fails validation.
(GGA)	 AT	57432-57540	GT	CTG
(CGG)	 AG	57747-57892	GT	AGG
(GGA)	 AG	58090-58251	CA	AGC
-recovered pasa_asmbl_51482.p1, terminal, 58090, 58251
-recovered pasa_asmbl_51482.p1, internal, 57747, 57892
Valid prediction for CodingQuarry_transcript_57768-T1
Valid prediction for snap_scaffold_7-snap.3584-T1
Valid prediction for CodingQuarry_transcript_57770-T1
Valid prediction for CodingQuarry_transcript_57764-T1
Valid prediction for snap_scaffold_7-snap.3587-T1
Valid prediction for GlimmerHMM_glimmerT_19020-T1
Valid prediction for snap_scaffold_7-snap.3585-T1
Valid prediction for GlimmerHMM_glimmerT_19027-T1
Valid prediction for GlimmerHMM_glimmerT_19025-T1
Valid prediction for CodingQuarry_transcript_57766-T1
Valid prediction for CodingQuarry_transcript_57769-T1
Valid prediction for snap_scaffold_7-snap.3598-T1
Valid prediction for snap_scaffold_7-snap.3601-T1
Valid prediction for CodingQuarry_transcript_57765-T1
Valid prediction for snap_scaffold_7-snap.3577-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.3583-T1
Valid prediction for snap_scaffold_7-snap.3586-T1
Valid prediction for snap_scaffold_7-snap.3596-T1
Valid prediction for snap_scaffold_7-snap.3600-T1
Valid prediction for snap_scaffold_7-snap.3606-T1
Valid prediction for GlimmerHMM_glimmerT_19017-T1
Valid prediction for GlimmerHMM_glimmerT_19029-T1
Valid prediction for GlimmerHMM_glimmerT_19030-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5130, rend_intergenic: 3351  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6793, rend_intergenic: 5361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14927, rend_intergenic: 6940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45589, rend_intergenic: 14930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64750, rend_intergenic: 61956  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73327, rend_intergenic: 67893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76754, rend_intergenic: 73969  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87825, rend_intergenic: 84147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117413, rend_intergenic: 92751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122345, rend_intergenic: 119197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 124233
-exon list size: 281


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.5    
3.9    
4.2    
4.6    
4.9    
5.3    
5.7    
6.0    
6.4    
6.7    
7.1    
7.4    
7.8    
8.1    
8.5    
8.8    
9.2    
9.5    
9.9    
10.2    
10.6    
11.0    
11.3    
11.7    
12.0    
12.4    
12.7    
13.1    
13.4    
13.8    
14.1    
14.5    
14.8    
15.2    
15.5    
15.9    
16.3    
16.6    
17.0    
17.3    
17.7    
18.0    
18.4    
18.7    
19.1    
19.4    
19.8    
20.1    
20.5    
20.8    
21.2    
21.6    
21.9    
22.3    
22.6    
23.0    
23.3    
23.7    
24.0    
24.4    
24.7    
25.1    
25.4    
25.8    
26.1    
26.5    
26.9    
27.2    
27.6    
27.9    
28.3    
28.6    
29.0    
29.3    
29.7    
30.0    
30.4    
30.7    
31.1    
31.4    
31.8    
32.2    
32.5    
32.9    
33.2    
33.6    
33.9    
34.3    
34.6    
35.0    
35.3    
35.7    
36.0    
36.4    
36.7    
37.1    
37.5    
37.8    
38.2    
38.5    
38.9    
39.2    
39.6    
39.9    
40.3    
40.6    
41.0    
41.3    
41.7    
42.0    
42.4    
42.8    
43.1    
43.5    
43.8    
44.2    
44.5    
44.9    
45.2    
45.6    
45.9    
46.3    
46.6    
47.0    
47.3    
47.7    
48.1    
48.4    
48.8    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.2    
51.6    
51.9    
52.3    
52.7    
53.0    
53.4    
53.7    
54.1    
54.4    
54.8    
55.1    
55.5    
55.8    
56.2    
56.5    
56.9    
57.2    
57.6    
58.0    
58.3    
58.7    
59.0    
59.4    
59.7    
60.1    
60.4    
60.8    
61.1    
61.5    
61.8    
62.2    
62.5    
62.9    
63.3    
63.6    
64.0    
64.3    
64.7    
65.0    
65.4    
65.7    
66.1    
66.4    
66.8    
67.1    
67.5    
67.8    
68.2    
68.6    
68.9    
69.3    
69.6    
70.0    
70.3    
70.7    
71.0    
71.4    
71.7    
72.1    
72.4    
72.8    
73.1    
73.5    
73.9    
74.2    
74.6    
74.9    
75.3    
75.6    
76.0    
76.3    
76.7    
77.0    
77.4    
77.7    
78.1    
78.4    
78.8    
79.2    
79.5    
79.9    
80.2    
80.6    
80.9    
81.3    
81.6    
82.0    
82.3    
82.7    
83.0    
83.4    
83.7    
84.1    
84.5    
84.8    
85.2    
85.5    
85.9    
86.2    
86.6    
86.9    
87.3    
87.6    
88.0    
88.3    
88.7    
89.0    
89.4    
89.8    
90.1    
90.5    
90.8    
91.2    
91.5    
91.9    
92.2    
92.6    
92.9    
93.3    
93.6    
94.0    
94.3    
94.7    
95.1    
95.4    
95.8    
96.1    
96.5    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 17 predictions from path traversal
Error with prediction: snap lend_intergenic: 5130, rend_intergenic: 3351  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6793, rend_intergenic: 5361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14927, rend_intergenic: 6940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45589, rend_intergenic: 14930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64750, rend_intergenic: 61956  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73327, rend_intergenic: 67893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76754, rend_intergenic: 73969  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87825, rend_intergenic: 84147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117413, rend_intergenic: 92751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122345, rend_intergenic: 119197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support