-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_16874083-17020367

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_18791-T1
Valid prediction for GlimmerHMM_glimmerT_18790-T1
Valid prediction for snap_scaffold_7-snap.3198-T1
Valid prediction for Augustus_model.g12649.t1
Valid prediction for snap_scaffold_7-snap.3188-T1
Valid prediction for snap_scaffold_7-snap.3222-T1
Valid prediction for Augustus_model.g12640.t1
Valid prediction for GlimmerHMM_glimmerT_18792-T1
Valid prediction for Augustus_model.g12637.t1
Valid prediction for snap_scaffold_7-snap.3213-T1
Valid prediction for snap_scaffold_7-snap.3200-T1
Valid prediction for snap_scaffold_7-snap.3218-T1
Valid prediction for snap_scaffold_7-snap.3217-T1
Valid prediction for snap_scaffold_7-snap.3209-T1
Valid prediction for GlimmerHMM_glimmerT_18794-T1
Valid prediction for GlimmerHMM_glimmerT_18802-T1
Valid prediction for snap_scaffold_7-snap.3191-T1
Valid prediction for Augustus_model.g12641.t1
Valid prediction for snap_scaffold_7-snap.3202-T1
Valid prediction for GlimmerHMM_glimmerT_18789-T1
Valid prediction for snap_scaffold_7-snap.3205-T1
Valid prediction for GlimmerHMM_glimmerT_18805-T1
Valid prediction for snap_scaffold_7-snap.3211-T1
Valid prediction for snap_scaffold_7-snap.3207-T1
Valid prediction for GlimmerHMM_glimmerT_18800-T1
Valid prediction for GlimmerHMM_glimmerT_18793-T1
Valid prediction for snap_scaffold_7-snap.3193-T1
Valid prediction for snap_scaffold_7-snap.3187-T1
Valid prediction for GlimmerHMM_glimmerT_18784-T1
Valid prediction for snap_scaffold_7-snap.3216-T1
Valid prediction for GlimmerHMM_glimmerT_18806-T1
Valid prediction for GlimmerHMM_glimmerT_18803-T1
Valid prediction for snap_scaffold_7-snap.3196-T1
Valid prediction for Augustus_model.g12643.t1
Valid prediction for GlimmerHMM_glimmerT_18797-T1
Valid prediction for snap_scaffold_7-snap.3190-T1
Valid prediction for snap_scaffold_7-snap.3215-T1
Valid prediction for Augustus_model.g12647.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.3208-T1
Valid prediction for GlimmerHMM_glimmerT_18796-T1
Valid prediction for GlimmerHMM_glimmerT_18798-T1
Valid prediction for snap_scaffold_7-snap.3195-T1
Valid prediction for Augustus_model.g12644.t1
Valid prediction for snap_scaffold_7-snap.3194-T1
Valid prediction for snap_scaffold_7-snap.3189-T1
Valid prediction for snap_scaffold_7-snap.3220-T1
Valid prediction for GlimmerHMM_glimmerT_18787-T1
Valid prediction for GlimmerHMM_glimmerT_18801-T1
Valid prediction for snap_scaffold_7-snap.3204-T1
Valid prediction for GlimmerHMM_glimmerT_18786-T1
Valid prediction for Augustus_model.g12638.t1
Valid prediction for Augustus_model.g12639.t1
Valid prediction for Augustus_model.g12646.t1
Valid prediction for snap_scaffold_7-snap.3206-T1
Valid prediction for GlimmerHMM_glimmerT_18804-T1
Valid prediction for GlimmerHMM_glimmerT_18795-T1
Valid prediction for Augustus_model.g12650.t1
Valid prediction for snap_scaffold_7-snap.3219-T1
Valid prediction for Augustus_model.g12645.t1
Valid prediction for snap_scaffold_7-snap.3212-T1
Valid prediction for snap_scaffold_7-snap.3197-T1
Valid prediction for snap_scaffold_7-snap.3214-T1
Valid prediction for GlimmerHMM_glimmerT_18785-T1
Valid prediction for snap_scaffold_7-snap.3221-T1
Valid prediction for Augustus_model.g12636.t1
Valid prediction for Augustus_model.g12648.t1
Valid prediction for snap_scaffold_7-snap.3201-T1
Valid prediction for snap_scaffold_7-snap.3199-T1
Valid prediction for GlimmerHMM_glimmerT_18788-T1
Valid prediction for snap_scaffold_7-snap.3203-T1
Valid prediction for snap_scaffold_7-snap.3210-T1
Valid prediction for GlimmerHMM_glimmerT_18799-T1
Valid prediction for Augustus_model.g12642.t1
Valid prediction for GlimmerHMM_glimmerT_18807-T1
Valid prediction for snap_scaffold_7-snap.3192-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15295, rend_intergenic: 8611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23416, rend_intergenic: 16314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24866, rend_intergenic: 23538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27799, rend_intergenic: 25060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39831, rend_intergenic: 28415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45263, rend_intergenic: 42184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49178, rend_intergenic: 45380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57893, rend_intergenic: 52839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61085, rend_intergenic: 58931  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66424, rend_intergenic: 62603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69515, rend_intergenic: 67407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75657, rend_intergenic: 70457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82191, rend_intergenic: 79498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88029, rend_intergenic: 85170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91047, rend_intergenic: 88301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102246, rend_intergenic: 96594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109105, rend_intergenic: 103147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120164, rend_intergenic: 109830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142997, rend_intergenic: 141419  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 146285
-exon list size: 239


building trellis

0.4    
0.8    
1.2    
1.7    
2.1    
2.5    
2.9    
3.3    
3.7    
4.1    
4.6    
5.0    
5.4    
5.8    
6.2    
6.6    
7.1    
7.5    
7.9    
8.3    
8.7    
9.1    
9.5    
10.0    
10.4    
10.8    
11.2    
11.6    
12.0    
12.4    
12.9    
13.3    
13.7    
14.1    
14.5    
14.9    
15.4    
15.8    
16.2    
16.6    
17.0    
17.4    
17.8    
18.3    
18.7    
19.1    
19.5    
19.9    
20.3    
20.7    
21.2    
21.6    
22.0    
22.4    
22.8    
23.2    
23.7    
24.1    
24.5    
24.9    
25.3    
25.7    
26.1    
26.6    
27.0    
27.4    
27.8    
28.2    
28.6    
29.0    
29.5    
29.9    
30.3    
30.7    
31.1    
31.5    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.9    
35.3    
35.7    
36.1    
36.5    
36.9    
37.3    
37.8    
38.2    
38.6    
39.0    
39.4    
39.8    
40.2    
40.7    
41.1    
41.5    
41.9    
42.3    
42.7    
43.2    
43.6    
44.0    
44.4    
44.8    
45.2    
45.6    
46.1    
46.5    
46.9    
47.3    
47.7    
48.1    
48.5    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.5    
51.9    
52.3    
52.7    
53.1    
53.5    
53.9    
54.4    
54.8    
55.2    
55.6    
56.0    
56.4    
56.8    
57.3    
57.7    
58.1    
58.5    
58.9    
59.3    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.7    
63.1    
63.5    
63.9    
64.3    
64.7    
65.1    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.5    
68.9    
69.3    
69.7    
70.1    
70.5    
71.0    
71.4    
71.8    
72.2    
72.6    
73.0    
73.4    
73.9    
74.3    
74.7    
75.1    
75.5    
75.9    
76.3    
76.8    
77.2    
77.6    
78.0    
78.4    
78.8    
79.3    
79.7    
80.1    
80.5    
80.9    
81.3    
81.7    
82.2    
82.6    
83.0    
83.4    
83.8    
84.2    
84.6    
85.1    
85.5    
85.9    
86.3    
86.7    
87.1    
87.6    
88.0    
88.4    
88.8    
89.2    
89.6    
90.0    
90.5    
90.9    
91.3    
91.7    
92.1    
92.5    
92.9    
93.4    
93.8    
94.2    
94.6    
95.0    
95.4    
95.9    
96.3    
96.7    
97.1    
97.5    
97.9    
98.3    
98.8    
99.2    
99.6    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 15295, rend_intergenic: 8611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23416, rend_intergenic: 16314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24866, rend_intergenic: 23538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27799, rend_intergenic: 25060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39831, rend_intergenic: 28415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45263, rend_intergenic: 42184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49178, rend_intergenic: 45380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57893, rend_intergenic: 52839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61085, rend_intergenic: 58931  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66424, rend_intergenic: 62603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69515, rend_intergenic: 67407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75657, rend_intergenic: 70457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82191, rend_intergenic: 79498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88029, rend_intergenic: 85170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91047, rend_intergenic: 88301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102246, rend_intergenic: 96594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109105, rend_intergenic: 103147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120164, rend_intergenic: 109830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142997, rend_intergenic: 141419  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support