-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_16492325-16696618

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_18747-T1
Valid prediction for snap_scaffold_7-snap.3125-T1
Valid prediction for snap_scaffold_7-snap.3131-T1
Valid prediction for snap_scaffold_7-snap.3122-T1
Valid prediction for GlimmerHMM_glimmerT_18753-T1
Valid prediction for GlimmerHMM_glimmerT_18743-T1
Valid prediction for snap_scaffold_7-snap.3144-T1
Valid prediction for GlimmerHMM_glimmerT_18752-T1
Valid prediction for GlimmerHMM_glimmerT_18749-T1
Valid prediction for GlimmerHMM_glimmerT_18742-T1
Valid prediction for snap_scaffold_7-snap.3121-T1
Valid prediction for GlimmerHMM_glimmerT_18754-T1
Valid prediction for snap_scaffold_7-snap.3124-T1
Valid prediction for snap_scaffold_7-snap.3136-T1
Valid prediction for snap_scaffold_7-snap.3129-T1
Valid prediction for Augustus_model.g12623.t1
Valid prediction for snap_scaffold_7-snap.3118-T1
Valid prediction for GlimmerHMM_glimmerT_18750-T1
Valid prediction for snap_scaffold_7-snap.3132-T1
Valid prediction for GlimmerHMM_glimmerT_18748-T1
Valid prediction for snap_scaffold_7-snap.3142-T1
Valid prediction for GlimmerHMM_glimmerT_18759-T1
Valid prediction for snap_scaffold_7-snap.3111-T1
Valid prediction for snap_scaffold_7-snap.3113-T1
Valid prediction for snap_scaffold_7-snap.3148-T1
Valid prediction for snap_scaffold_7-snap.3145-T1
Valid prediction for snap_scaffold_7-snap.3115-T1
Valid prediction for snap_scaffold_7-snap.3149-T1
Valid prediction for GlimmerHMM_glimmerT_18739-T1
Valid prediction for GlimmerHMM_glimmerT_18757-T1
Valid prediction for snap_scaffold_7-snap.3128-T1
Valid prediction for snap_scaffold_7-snap.3147-T1
Valid prediction for snap_scaffold_7-snap.3107-T1
Valid prediction for snap_scaffold_7-snap.3133-T1
Valid prediction for snap_scaffold_7-snap.3106-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_18745-T1
Valid prediction for snap_scaffold_7-snap.3110-T1
Valid prediction for snap_scaffold_7-snap.3141-T1
Valid prediction for GlimmerHMM_glimmerT_18755-T1
Valid prediction for snap_scaffold_7-snap.3127-T1
Valid prediction for snap_scaffold_7-snap.3137-T1
Valid prediction for GlimmerHMM_glimmerT_18751-T1
Valid prediction for GlimmerHMM_glimmerT_18741-T1
Valid prediction for snap_scaffold_7-snap.3114-T1
Valid prediction for snap_scaffold_7-snap.3109-T1
Valid prediction for snap_scaffold_7-snap.3134-T1
Valid prediction for snap_scaffold_7-snap.3120-T1
Valid prediction for snap_scaffold_7-snap.3112-T1
Valid prediction for snap_scaffold_7-snap.3138-T1
Valid prediction for snap_scaffold_7-snap.3135-T1
Valid prediction for GlimmerHMM_glimmerT_18756-T1
Valid prediction for GlimmerHMM_glimmerT_18760-T1
Valid prediction for GlimmerHMM_glimmerT_18740-T1
Valid prediction for snap_scaffold_7-snap.3130-T1
Valid prediction for snap_scaffold_7-snap.3139-T1
Valid prediction for snap_scaffold_7-snap.3146-T1
Valid prediction for snap_scaffold_7-snap.3119-T1
Valid prediction for snap_scaffold_7-snap.3140-T1
Valid prediction for snap_scaffold_7-snap.3105-T1
Valid prediction for snap_scaffold_7-snap.3116-T1
Valid prediction for snap_scaffold_7-snap.3126-T1
Valid prediction for GlimmerHMM_glimmerT_18746-T1
Valid prediction for GlimmerHMM_glimmerT_18744-T1
Valid prediction for snap_scaffold_7-snap.3123-T1
Valid prediction for snap_scaffold_7-snap.3143-T1
Valid prediction for snap_scaffold_7-snap.3108-T1
Valid prediction for GlimmerHMM_glimmerT_18758-T1
Valid prediction for snap_scaffold_7-snap.3117-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13293, rend_intergenic: 10394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23172, rend_intergenic: 14740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28840, rend_intergenic: 23473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39910, rend_intergenic: 29190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47823, rend_intergenic: 42448  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50644, rend_intergenic: 48147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50993, rend_intergenic: 50701  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56945, rend_intergenic: 53057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67901, rend_intergenic: 59578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77908, rend_intergenic: 73036  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89538, rend_intergenic: 84571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91550, rend_intergenic: 89687  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103433, rend_intergenic: 98839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116881, rend_intergenic: 107022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126702, rend_intergenic: 119871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140331, rend_intergenic: 138611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167698, rend_intergenic: 156779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182105, rend_intergenic: 170801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192363, rend_intergenic: 182688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204158, rend_intergenic: 193365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 204294
-exon list size: 258


building trellis

0.4    
0.8    
1.2    
1.5    
1.9    
2.3    
2.7    
3.1    
3.5    
3.8    
4.2    
4.6    
5.0    
5.4    
5.8    
6.2    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.8    
9.2    
9.6    
10.0    
10.4    
10.8    
11.2    
11.5    
11.9    
12.3    
12.7    
13.1    
13.5    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
18.8    
19.2    
19.6    
20.0    
20.4    
20.8    
21.2    
21.5    
21.9    
22.3    
22.7    
23.1    
23.5    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.5    
26.9    
27.3    
27.7    
28.1    
28.5    
28.8    
29.2    
29.6    
30.0    
30.4    
30.8    
31.2    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.8    
34.2    
34.6    
35.0    
35.4    
35.8    
36.2    
36.5    
36.9    
37.3    
37.7    
38.1    
38.5    
38.8    
39.2    
39.6    
40.0    
40.4    
40.8    
41.2    
41.5    
41.9    
42.3    
42.7    
43.1    
43.5    
43.8    
44.2    
44.6    
45.0    
45.4    
45.8    
46.2    
46.5    
46.9    
47.3    
47.7    
48.1    
48.5    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.5    
51.9    
52.3    
52.7    
53.1    
53.5    
53.8    
54.2    
54.6    
55.0    
55.4    
55.8    
56.2    
56.5    
56.9    
57.3    
57.7    
58.1    
58.5    
58.8    
59.2    
59.6    
60.0    
60.4    
60.8    
61.2    
61.5    
61.9    
62.3    
62.7    
63.1    
63.5    
63.8    
64.2    
64.6    
65.0    
65.4    
65.8    
66.2    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
68.8    
69.2    
69.6    
70.0    
70.4    
70.8    
71.2    
71.5    
71.9    
72.3    
72.7    
73.1    
73.5    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.5    
76.9    
77.3    
77.7    
78.1    
78.5    
78.8    
79.2    
79.6    
80.0    
80.4    
80.8    
81.2    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.5    
86.9    
87.3    
87.7    
88.1    
88.5    
88.8    
89.2    
89.6    
90.0    
90.4    
90.8    
91.2    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.8    
94.2    
94.6    
95.0    
95.4    
95.8    
96.2    
96.5    
96.9    
97.3    
97.7    
98.1    
98.5    
98.8    
99.2    
99.6    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 13293, rend_intergenic: 10394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23172, rend_intergenic: 14740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28840, rend_intergenic: 23473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39910, rend_intergenic: 29190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47823, rend_intergenic: 42448  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50644, rend_intergenic: 48147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50993, rend_intergenic: 50701  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56945, rend_intergenic: 53057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67901, rend_intergenic: 59578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77908, rend_intergenic: 73036  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89538, rend_intergenic: 84571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91550, rend_intergenic: 89687  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103433, rend_intergenic: 98839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116881, rend_intergenic: 107022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126702, rend_intergenic: 119871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140331, rend_intergenic: 138611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167698, rend_intergenic: 156779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182105, rend_intergenic: 170801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192363, rend_intergenic: 182688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204158, rend_intergenic: 193365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10393
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support