-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_16242039-16497100

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_18718-T1
Valid prediction for snap_scaffold_7-snap.3101-T1
Valid prediction for snap_scaffold_7-snap.3072-T1
Valid prediction for snap_scaffold_7-snap.3066-T1
Valid prediction for snap_scaffold_7-snap.3075-T1
Valid prediction for snap_scaffold_7-snap.3091-T1
Valid prediction for Augustus_model.g12620.t1
Valid prediction for snap_scaffold_7-snap.3084-T1
Valid prediction for GlimmerHMM_glimmerT_18720-T1
Valid prediction for Augustus_model.g12613.t1
Valid prediction for Augustus_model.g12614.t1
Valid prediction for Augustus_model.g12610.t1
Valid prediction for GlimmerHMM_glimmerT_18730-T1
Valid prediction for snap_scaffold_7-snap.3070-T1
Valid prediction for snap_scaffold_7-snap.3062-T1
Valid prediction for snap_scaffold_7-snap.3087-T1
Valid prediction for snap_scaffold_7-snap.3083-T1
Valid prediction for Augustus_model.g12609.t1
Valid prediction for Augustus_model.g12615.t1
Valid prediction for snap_scaffold_7-snap.3063-T1
Valid prediction for GlimmerHMM_glimmerT_18732-T1
Valid prediction for GlimmerHMM_glimmerT_18724-T1
Valid prediction for snap_scaffold_7-snap.3100-T1
Valid prediction for GlimmerHMM_glimmerT_18725-T1
Valid prediction for snap_scaffold_7-snap.3093-T1
Valid prediction for Augustus_model.g12618.t1
Valid prediction for GlimmerHMM_glimmerT_18717-T1
Valid prediction for snap_scaffold_7-snap.3095-T1
Valid prediction for GlimmerHMM_glimmerT_18731-T1
Valid prediction for snap_scaffold_7-snap.3089-T1
Valid prediction for snap_scaffold_7-snap.3076-T1
Valid prediction for snap_scaffold_7-snap.3102-T1
Valid prediction for GlimmerHMM_glimmerT_18727-T1
Valid prediction for GlimmerHMM_glimmerT_18737-T1
Valid prediction for GlimmerHMM_glimmerT_18722-T1
Valid prediction for Augustus_model.g12621.t1
Valid prediction for snap_scaffold_7-snap.3097-T1
Valid prediction for snap_scaffold_7-snap.3079-T1
Valid prediction for snap_scaffold_7-snap.3104-T1
Valid prediction for GlimmerHMM_glimmerT_18736-T1
Valid prediction for Augustus_model.g12622.t1
Valid prediction for Augustus_model.g12619.t1
Valid prediction for GlimmerHMM_glimmerT_18721-T1
Valid prediction for pasa_asmbl_50557.p2

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_18719-T1
Valid prediction for GlimmerHMM_glimmerT_18728-T1
Valid prediction for GlimmerHMM_glimmerT_18738-T1
Valid prediction for GlimmerHMM_glimmerT_18733-T1
Valid prediction for snap_scaffold_7-snap.3068-T1
Valid prediction for GlimmerHMM_glimmerT_18726-T1
Valid prediction for snap_scaffold_7-snap.3085-T1
Valid prediction for GlimmerHMM_glimmerT_18729-T1
Valid prediction for snap_scaffold_7-snap.3069-T1
Valid prediction for snap_scaffold_7-snap.3094-T1
Valid prediction for snap_scaffold_7-snap.3088-T1
Valid prediction for snap_scaffold_7-snap.3071-T1
Valid prediction for snap_scaffold_7-snap.3078-T1
Valid prediction for snap_scaffold_7-snap.3074-T1
Valid prediction for snap_scaffold_7-snap.3073-T1
Valid prediction for CodingQuarry_transcript_57739-T1
Valid prediction for Augustus_model.g12617.t1
Valid prediction for GlimmerHMM_glimmerT_18734-T1
Valid prediction for snap_scaffold_7-snap.3092-T1
Valid prediction for snap_scaffold_7-snap.3099-T1
Valid prediction for snap_scaffold_7-snap.3098-T1
Valid prediction for Augustus_model.g12611.t1
Valid prediction for snap_scaffold_7-snap.3077-T1
Valid prediction for GlimmerHMM_glimmerT_18735-T1
Valid prediction for snap_scaffold_7-snap.3090-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.3061-T1
Valid prediction for Augustus_model.g12612.t1
Valid prediction for snap_scaffold_7-snap.3065-T1
Valid prediction for snap_scaffold_7-snap.3082-T1
Valid prediction for HiQ_model.g12616.t1
Valid prediction for snap_scaffold_7-snap.3096-T1
Valid prediction for GlimmerHMM_glimmerT_18723-T1
Valid prediction for snap_scaffold_7-snap.3086-T1
Valid prediction for snap_scaffold_7-snap.3103-T1
Valid prediction for snap_scaffold_7-snap.3080-T1
Valid prediction for snap_scaffold_7-snap.3064-T1
Valid prediction for pasa_asmbl_51412.p1
Valid prediction for snap_scaffold_7-snap.3081-T1
Valid prediction for snap_scaffold_7-snap.3067-T1
Sorry, intron length (3) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10626, rend_intergenic: 3365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25701, rend_intergenic: 11113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31906, rend_intergenic: 25790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42843, rend_intergenic: 32220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53154, rend_intergenic: 44629  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65202, rend_intergenic: 61080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69406, rend_intergenic: 65658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79934, rend_intergenic: 72798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86491, rend_intergenic: 82441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108987, rend_intergenic: 91960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124568, rend_intergenic: 110255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129450, rend_intergenic: 125850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144685, rend_intergenic: 133946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173429, rend_intergenic: 159783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184152, rend_intergenic: 173789  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191903, rend_intergenic: 184797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195519, rend_intergenic: 191984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204898, rend_intergenic: 195580  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227997, rend_intergenic: 211284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243733, rend_intergenic: 228254  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 248571, rend_intergenic: 248278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 250727, rend_intergenic: 249860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 255062
-exon list size: 342


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.7    
2.0    
2.3    
2.6    
2.9    
3.2    
3.5    
3.8    
4.1    
4.4    
4.7    
4.9    
5.2    
5.5    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.6    
7.8    
8.1    
8.4    
8.7    
9.0    
9.3    
9.6    
9.9    
10.2    
10.5    
10.8    
11.0    
11.3    
11.6    
11.9    
12.2    
12.5    
12.8    
13.1    
13.4    
13.7    
14.0    
14.2    
14.5    
14.8    
15.1    
15.4    
15.7    
16.0    
16.3    
16.6    
16.9    
17.2    
17.4    
17.7    
18.0    
18.3    
18.6    
18.9    
19.2    
19.5    
19.8    
20.1    
20.3    
20.6    
20.9    
21.2    
21.5    
21.8    
22.1    
22.4    
22.7    
23.0    
23.3    
23.5    
23.8    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.2    
26.5    
26.7    
27.0    
27.3    
27.6    
27.9    
28.2    
28.5    
28.8    
29.1    
29.4    
29.7    
29.9    
30.2    
30.5    
30.8    
31.1    
31.4    
31.7    
32.0    
32.3    
32.6    
32.8    
33.1    
33.4    
33.7    
34.0    
34.3    
34.6    
34.9    
35.2    
35.5    
35.8    
36.0    
36.3    
36.6    
36.9    
37.2    
37.5    
37.8    
38.1    
38.4    
38.7    
39.0    
39.2    
39.5    
39.8    
40.1    
40.4    
40.7    
41.0    
41.3    
41.6    
41.9    
42.2    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.2    
44.5    
44.8    
45.1    
45.3    
45.6    
45.9    
46.2    
46.5    
46.8    
47.1    
47.4    
47.7    
48.0    
48.3    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.7    
52.0    
52.3    
52.6    
52.9    
53.2    
53.5    
53.8    
54.1    
54.4    
54.7    
54.9    
55.2    
55.5    
55.8    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
57.8    
58.1    
58.4    
58.7    
59.0    
59.3    
59.6    
59.9    
60.2    
60.5    
60.8    
61.0    
61.3    
61.6    
61.9    
62.2    
62.5    
62.8    
63.1    
63.4    
63.7    
64.0    
64.2    
64.5    
64.8    
65.1    
65.4    
65.7    
66.0    
66.3    
66.6    
66.9    
67.2    
67.4    
67.7    
68.0    
68.3    
68.6    
68.9    
69.2    
69.5    
69.8    
70.1    
70.3    
70.6    
70.9    
71.2    
71.5    
71.8    
72.1    
72.4    
72.7    
73.0    
73.3    
73.5    
73.8    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.2    
76.5    
76.7    
77.0    
77.3    
77.6    
77.9    
78.2    
78.5    
78.8    
79.1    
79.4    
79.7    
79.9    
80.2    
80.5    
80.8    
81.1    
81.4    
81.7    
82.0    
82.3    
82.6    
82.8    
83.1    
83.4    
83.7    
84.0    
84.3    
84.6    
84.9    
85.2    
85.5    
85.8    
86.0    
86.3    
86.6    
86.9    
87.2    
87.5    
87.8    
88.1    
88.4    
88.7    
89.0    
89.2    
89.5    
89.8    
90.1    
90.4    
90.7    
91.0    
91.3    
91.6    
91.9    
92.2    
92.4    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.5    
94.8    
95.1    
95.3    
95.6    
95.9    
96.2    
96.5    
96.8    
97.1    
97.4    
97.7    
98.0    
98.3    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 10626, rend_intergenic: 3365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25701, rend_intergenic: 11113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31906, rend_intergenic: 25790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42843, rend_intergenic: 32220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53154, rend_intergenic: 44629  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65202, rend_intergenic: 61080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69406, rend_intergenic: 65658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79934, rend_intergenic: 72798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86491, rend_intergenic: 82441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108987, rend_intergenic: 91960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124568, rend_intergenic: 110255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129450, rend_intergenic: 125850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144685, rend_intergenic: 133946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173429, rend_intergenic: 159783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184152, rend_intergenic: 173789  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191903, rend_intergenic: 184797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195519, rend_intergenic: 191984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204898, rend_intergenic: 195580  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227997, rend_intergenic: 211284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243733, rend_intergenic: 228254  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 248571, rend_intergenic: 248278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 250727, rend_intergenic: 249860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support