-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_15614015-15828571

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_7-snap.2970-T1
Valid prediction for Augustus_model.g12562.t1
Couldn't classify 33159, 33480
Couldn't classify 39368, 39466
Sorry, prediction pasa_asmbl_50457.p1 fails validation.
(GTT)	 GT	33159-33480	GT	GTG
(ACG)	 AG	34095-34206	GT	AGG
(GGC)	 AG	35350-35539	GT	AGG
(ATG)	 AG	37649-37714	GT	AGG
(CTG)	 AG	37863-37964	GT	AGG
(AGA)	 AG	39368-39466	CA	GGC
-recovered pasa_asmbl_50457.p1, initial, 37649, 37714
-recovered pasa_asmbl_50457.p1, internal, 34095, 34206
-recovered pasa_asmbl_50457.p1, internal, 35350, 35539
-recovered pasa_asmbl_50457.p1, internal, 37649, 37714
-recovered pasa_asmbl_50457.p1, internal, 37863, 37964
Couldn't classify 48113, 48844
Sorry, prediction pasa_asmbl_50461.p1 fails validation.
(TGT)	 TT	48113-48844	AC	GAA
Valid prediction for snap_scaffold_7-snap.2945-T1
Valid prediction for snap_scaffold_7-snap.2978-T1
Valid prediction for snap_scaffold_7-snap.2952-T1
Valid prediction for snap_scaffold_7-snap.2942-T1
Valid prediction for snap_scaffold_7-snap.2967-T1
Valid prediction for Augustus_model.g12561.t1
Valid prediction for Augustus_model.g12560.t1
Valid prediction for Augustus_model.g12559.t1
Valid prediction for snap_scaffold_7-snap.2964-T1
Valid prediction for GlimmerHMM_glimmerT_18646-T1
Valid prediction for Augustus_model.g12558.t1
Valid prediction for Augustus_model.g12572.t1
Valid prediction for GlimmerHMM_glimmerT_18656-T1
Valid prediction for snap_scaffold_7-snap.2975-T1
Valid prediction for snap_scaffold_7-snap.2941-T1
Valid prediction for snap_scaffold_7-snap.2944-T1
Valid prediction for snap_scaffold_7-snap.2939-T1
Valid prediction for snap_scaffold_7-snap.2966-T1
Valid prediction for snap_scaffold_7-snap.2969-T1
Valid prediction for GlimmerHMM_glimmerT_18660-T1
Valid prediction for snap_scaffold_7-snap.2976-T1
Valid prediction for snap_scaffold_7-snap.2937-T1
Valid prediction for Augustus_model.g12566.t1
Couldn't classify 39368, 39466
Sorry, prediction pasa_asmbl_50458.p1 fails validation.
(ATG)	 GG	34106-34206	GT	AGG
(GGC)	 AG	35350-35539	GT	AGG
(ATG)	 AG	37649-37714	GT	AGG
(CTG)	 AG	37863-37964	GT	AGG
(AGA)	 AG	39368-39466	CA	GGC
-recovered pasa_asmbl_50458.p1, initial, 34106, 34206
-recovered pasa_asmbl_50458.p1, initial, 37649, 37714
-recovered pasa_asmbl_50458.p1, internal, 35350, 35539
-recovered pasa_asmbl_50458.p1, internal, 37649, 37714
-recovered pasa_asmbl_50458.p1, internal, 37863, 37964
Valid prediction for GlimmerHMM_glimmerT_18661-T1
Valid prediction for snap_scaffold_7-snap.2973-T1
Valid prediction for snap_scaffold_7-snap.2957-T1
Valid prediction for snap_scaffold_7-snap.2954-T1
Valid prediction for snap_scaffold_7-snap.2948-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.2972-T1
Valid prediction for Augustus_model.g12574.t1
Valid prediction for Augustus_model.g12564.t1
Valid prediction for snap_scaffold_7-snap.2947-T1
Valid prediction for GlimmerHMM_glimmerT_18659-T1
Valid prediction for Augustus_model.g12569.t1
Valid prediction for snap_scaffold_7-snap.2953-T1
Valid prediction for GlimmerHMM_glimmerT_18647-T1
Valid prediction for snap_scaffold_7-snap.2971-T1
Valid prediction for snap_scaffold_7-snap.2940-T1
Valid prediction for snap_scaffold_7-snap.2968-T1
Valid prediction for GlimmerHMM_glimmerT_18644-T1
Valid prediction for GlimmerHMM_glimmerT_18650-T1
Valid prediction for snap_scaffold_7-snap.2981-T1
Valid prediction for GlimmerHMM_glimmerT_18643-T1
Valid prediction for Augustus_model.g12557.t1
Valid prediction for Augustus_model.g12567.t1
Valid prediction for Augustus_model.g12573.t1
Valid prediction for snap_scaffold_7-snap.2962-T1
Valid prediction for snap_scaffold_7-snap.2979-T1
Valid prediction for snap_scaffold_7-snap.2963-T1
Valid prediction for snap_scaffold_7-snap.2938-T1
Valid prediction for snap_scaffold_7-snap.2943-T1
Valid prediction for snap_scaffold_7-snap.2965-T1
Valid prediction for GlimmerHMM_glimmerT_18662-T1
Valid prediction for snap_scaffold_7-snap.2961-T1
Valid prediction for GlimmerHMM_glimmerT_18651-T1
Valid prediction for GlimmerHMM_glimmerT_18658-T1
Valid prediction for snap_scaffold_7-snap.2946-T1
Valid prediction for GlimmerHMM_glimmerT_18655-T1
Valid prediction for Augustus_model.g12563.t1
Valid prediction for GlimmerHMM_glimmerT_18649-T1
Valid prediction for snap_scaffold_7-snap.2956-T1
Valid prediction for GlimmerHMM_glimmerT_18645-T1
Valid prediction for snap_scaffold_7-snap.2951-T1
Valid prediction for snap_scaffold_7-snap.2955-T1
Valid prediction for snap_scaffold_7-snap.2960-T1
Valid prediction for GlimmerHMM_glimmerT_18652-T1
Valid prediction for Augustus_model.g12571.t1
Valid prediction for snap_scaffold_7-snap.2950-T1
Valid prediction for GlimmerHMM_glimmerT_18653-T1
Valid prediction for Augustus_model.g12568.t1
Valid prediction for snap_scaffold_7-snap.2974-T1
Valid prediction for GlimmerHMM_glimmerT_18657-T1
Valid prediction for GlimmerHMM_glimmerT_18648-T1
Valid prediction for snap_scaffold_7-snap.2949-T1
Valid prediction for Augustus_model.g12570.t1
Valid prediction for snap_scaffold_7-snap.2959-T1
Valid prediction for snap_scaffold_7-snap.2977-T1
Valid prediction for GlimmerHMM_glimmerT_18654-T1
Valid prediction for snap_scaffold_7-snap.2958-T1
Valid prediction for Augustus_model.g12565.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5191, rend_intergenic: 3199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8611, rend_intergenic: 6890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10806, rend_intergenic: 8792  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21417, rend_intergenic: 18062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25067, rend_intergenic: 21447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36460, rend_intergenic: 31902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45212, rend_intergenic: 36504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51019, rend_intergenic: 45457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59847, rend_intergenic: 59352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73519, rend_intergenic: 70774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84903, rend_intergenic: 83253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89328, rend_intergenic: 88162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125838, rend_intergenic: 122850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127478, rend_intergenic: 125973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195763, rend_intergenic: 190748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204080, rend_intergenic: 200939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 214557
-exon list size: 282


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.5    
3.9    
4.2    
4.6    
4.9    
5.3    
5.6    
6.0    
6.3    
6.7    
7.0    
7.4    
7.7    
8.1    
8.5    
8.8    
9.2    
9.5    
9.9    
10.2    
10.6    
10.9    
11.3    
11.6    
12.0    
12.3    
12.7    
13.0    
13.4    
13.7    
14.1    
14.4    
14.8    
15.1    
15.5    
15.8    
16.2    
16.5    
16.9    
17.3    
17.6    
18.0    
18.3    
18.7    
19.0    
19.4    
19.7    
20.1    
20.4    
20.8    
21.1    
21.5    
21.8    
22.2    
22.5    
22.9    
23.2    
23.6    
23.9    
24.3    
24.6    
25.0    
25.4    
25.7    
26.1    
26.4    
26.8    
27.1    
27.5    
27.8    
28.2    
28.5    
28.9    
29.2    
29.6    
29.9    
30.3    
30.6    
31.0    
31.3    
31.7    
32.0    
32.4    
32.7    
33.1    
33.5    
33.8    
34.2    
34.5    
34.9    
35.2    
35.6    
35.9    
36.3    
36.6    
37.0    
37.3    
37.7    
38.0    
38.4    
38.7    
39.1    
39.4    
39.8    
40.1    
40.5    
40.8    
41.2    
41.5    
41.9    
42.3    
42.6    
43.0    
43.3    
43.7    
44.0    
44.4    
44.7    
45.1    
45.4    
45.8    
46.1    
46.5    
46.8    
47.2    
47.5    
47.9    
48.2    
48.6    
48.9    
49.3    
49.6    
50.0    
50.4    
50.7    
51.1    
51.4    
51.8    
52.1    
52.5    
52.8    
53.2    
53.5    
53.9    
54.2    
54.6    
54.9    
55.3    
55.6    
56.0    
56.3    
56.7    
57.0    
57.4    
57.7    
58.1    
58.5    
58.8    
59.2    
59.5    
59.9    
60.2    
60.6    
60.9    
61.3    
61.6    
62.0    
62.3    
62.7    
63.0    
63.4    
63.7    
64.1    
64.4    
64.8    
65.1    
65.5    
65.8    
66.2    
66.5    
66.9    
67.3    
67.6    
68.0    
68.3    
68.7    
69.0    
69.4    
69.7    
70.1    
70.4    
70.8    
71.1    
71.5    
71.8    
72.2    
72.5    
72.9    
73.2    
73.6    
73.9    
74.3    
74.6    
75.0    
75.4    
75.7    
76.1    
76.4    
76.8    
77.1    
77.5    
77.8    
78.2    
78.5    
78.9    
79.2    
79.6    
79.9    
80.3    
80.6    
81.0    
81.3    
81.7    
82.0    
82.4    
82.7    
83.1    
83.5    
83.8    
84.2    
84.5    
84.9    
85.2    
85.6    
85.9    
86.3    
86.6    
87.0    
87.3    
87.7    
88.0    
88.4    
88.7    
89.1    
89.4    
89.8    
90.1    
90.5    
90.8    
91.2    
91.5    
91.9    
92.3    
92.6    
93.0    
93.3    
93.7    
94.0    
94.4    
94.7    
95.1    
95.4    
95.8    
96.1    
96.5    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 5191, rend_intergenic: 3199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8611, rend_intergenic: 6890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10806, rend_intergenic: 8792  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21417, rend_intergenic: 18062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25067, rend_intergenic: 21447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36460, rend_intergenic: 31902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45212, rend_intergenic: 36504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51019, rend_intergenic: 45457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59847, rend_intergenic: 59352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73519, rend_intergenic: 70774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84903, rend_intergenic: 83253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89328, rend_intergenic: 88162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125838, rend_intergenic: 122850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127478, rend_intergenic: 125973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195763, rend_intergenic: 190748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204080, rend_intergenic: 200939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support