-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_14487393-14684081

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_7-snap.2753-T1
Valid prediction for GlimmerHMM_glimmerT_18529-T1
Valid prediction for snap_scaffold_7-snap.2748-T1
Valid prediction for snap_scaffold_7-snap.2755-T1
Valid prediction for snap_scaffold_7-snap.2742-T1
Valid prediction for Augustus_model.g12486.t1
Valid prediction for snap_scaffold_7-snap.2731-T1
Valid prediction for Augustus_model.g12482.t1
Valid prediction for snap_scaffold_7-snap.2744-T1
Valid prediction for GlimmerHMM_glimmerT_18518-T1
Valid prediction for GlimmerHMM_glimmerT_18516-T1
Valid prediction for GlimmerHMM_glimmerT_18524-T1
Valid prediction for snap_scaffold_7-snap.2745-T1
Valid prediction for snap_scaffold_7-snap.2739-T1
Valid prediction for snap_scaffold_7-snap.2724-T1
Valid prediction for snap_scaffold_7-snap.2760-T1
Valid prediction for snap_scaffold_7-snap.2726-T1
Valid prediction for GlimmerHMM_glimmerT_18521-T1
Valid prediction for snap_scaffold_7-snap.2749-T1
Valid prediction for Augustus_model.g12481.t1
Valid prediction for snap_scaffold_7-snap.2733-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_18515-T1
Valid prediction for Augustus_model.g12479.t1
Valid prediction for Augustus_model.g12468.t1
Valid prediction for snap_scaffold_7-snap.2759-T1
Valid prediction for GlimmerHMM_glimmerT_18509-T1
Valid prediction for Augustus_model.g12467.t1
Valid prediction for GlimmerHMM_glimmerT_18522-T1
Valid prediction for GlimmerHMM_glimmerT_18512-T1
Valid prediction for Augustus_model.g12478.t1
Valid prediction for snap_scaffold_7-snap.2734-T1
Valid prediction for snap_scaffold_7-snap.2729-T1
Valid prediction for snap_scaffold_7-snap.2727-T1
Valid prediction for snap_scaffold_7-snap.2746-T1
Valid prediction for snap_scaffold_7-snap.2741-T1
Valid prediction for GlimmerHMM_glimmerT_18527-T1
Valid prediction for snap_scaffold_7-snap.2754-T1
Valid prediction for GlimmerHMM_glimmerT_18510-T1
Valid prediction for Augustus_model.g12476.t1
Valid prediction for snap_scaffold_7-snap.2737-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_18525-T1
Valid prediction for GlimmerHMM_glimmerT_18514-T1
Valid prediction for Augustus_model.g12472.t1
Valid prediction for pasa_asmbl_51338.p1
Valid prediction for Augustus_model.g12475.t1
Couldn't classify 19301, 19681
Sorry, prediction pasa_asmbl_50398.p1 fails validation.
(ATG)	 AA	19301-19681	GG	GGG
Valid prediction for GlimmerHMM_glimmerT_18528-T1
Valid prediction for Augustus_model.g12471.t1
Valid prediction for Augustus_model.g12470.t1
Valid prediction for Augustus_model.g12485.t1
Valid prediction for snap_scaffold_7-snap.2730-T1
Valid prediction for snap_scaffold_7-snap.2738-T1
Valid prediction for GlimmerHMM_glimmerT_18511-T1
Valid prediction for snap_scaffold_7-snap.2728-T1
Valid prediction for Augustus_model.g12484.t1
Valid prediction for snap_scaffold_7-snap.2735-T1
Valid prediction for snap_scaffold_7-snap.2725-T1
Valid prediction for HiQ_model.g12469.t1
Valid prediction for snap_scaffold_7-snap.2747-T1
Valid prediction for CodingQuarry_transcript_57716-T1
Valid prediction for GlimmerHMM_glimmerT_18519-T1
Valid prediction for pasa_asmbl_51336.p1
Valid prediction for snap_scaffold_7-snap.2758-T1
Valid prediction for GlimmerHMM_glimmerT_18513-T1
Valid prediction for snap_scaffold_7-snap.2757-T1
Valid prediction for snap_scaffold_7-snap.2756-T1
Valid prediction for snap_scaffold_7-snap.2732-T1
Valid prediction for Augustus_model.g12473.t1
Valid prediction for snap_scaffold_7-snap.2722-T1
Valid prediction for GlimmerHMM_glimmerT_18530-T1
Valid prediction for GlimmerHMM_glimmerT_18517-T1
Valid prediction for Augustus_model.g12474.t1
Valid prediction for snap_scaffold_7-snap.2752-T1
Valid prediction for snap_scaffold_7-snap.2743-T1
Valid prediction for Augustus_model.g12483.t1
Valid prediction for snap_scaffold_7-snap.2736-T1
Valid prediction for snap_scaffold_7-snap.2750-T1
Valid prediction for Augustus_model.g12477.t1
Valid prediction for snap_scaffold_7-snap.2723-T1
Valid prediction for Augustus_model.g12480.t1
Valid prediction for GlimmerHMM_glimmerT_18523-T1
Valid prediction for snap_scaffold_7-snap.2761-T1
Valid prediction for GlimmerHMM_glimmerT_18526-T1
Valid prediction for snap_scaffold_7-snap.2740-T1
Valid prediction for GlimmerHMM_glimmerT_18520-T1
Valid prediction for snap_scaffold_7-snap.2751-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18334, rend_intergenic: 12803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36829, rend_intergenic: 31339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49486, rend_intergenic: 49310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51587, rend_intergenic: 49548  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62222, rend_intergenic: 51734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72525, rend_intergenic: 62366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82130, rend_intergenic: 79814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83161, rend_intergenic: 82762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86246, rend_intergenic: 83927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117346, rend_intergenic: 86903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120229, rend_intergenic: 117623  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126647, rend_intergenic: 120596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132632, rend_intergenic: 130089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148187, rend_intergenic: 137132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161204, rend_intergenic: 148736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177305, rend_intergenic: 161344  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179784, rend_intergenic: 177663  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195270, rend_intergenic: 182913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 196689
-exon list size: 397


building trellis

0.3    
0.5    
0.8    
1.0    
1.3    
1.5    
1.8    
2.0    
2.3    
2.5    
2.8    
3.0    
3.3    
3.5    
3.8    
4.0    
4.3    
4.5    
4.8    
5.0    
5.3    
5.5    
5.8    
6.0    
6.3    
6.5    
6.8    
7.0    
7.3    
7.5    
7.8    
8.0    
8.3    
8.5    
8.8    
9.0    
9.3    
9.5    
9.8    
10.0    
10.3    
10.5    
10.8    
11.0    
11.3    
11.5    
11.8    
12.0    
12.3    
12.5    
12.8    
13.0    
13.3    
13.5    
13.8    
14.0    
14.3    
14.5    
14.8    
15.0    
15.3    
15.5    
15.8    
16.0    
16.3    
16.5    
16.8    
17.0    
17.3    
17.5    
17.8    
18.0    
18.3    
18.5    
18.8    
19.0    
19.3    
19.5    
19.8    
20.1    
20.3    
20.6    
20.8    
21.1    
21.3    
21.6    
21.8    
22.1    
22.3    
22.6    
22.8    
23.1    
23.3    
23.6    
23.8    
24.1    
24.3    
24.6    
24.8    
25.1    
25.3    
25.6    
25.8    
26.1    
26.3    
26.6    
26.8    
27.1    
27.3    
27.6    
27.8    
28.1    
28.3    
28.6    
28.8    
29.1    
29.3    
29.6    
29.8    
30.1    
30.3    
30.6    
30.8    
31.1    
31.3    
31.6    
31.8    
32.1    
32.3    
32.6    
32.8    
33.1    
33.3    
33.6    
33.8    
34.1    
34.3    
34.6    
34.8    
35.1    
35.3    
35.6    
35.8    
36.1    
36.3    
36.6    
36.8    
37.1    
37.3    
37.6    
37.8    
38.1    
38.3    
38.6    
38.8    
39.1    
39.3    
39.6    
39.8    
40.1    
40.4    
40.6    
40.9    
41.1    
41.4    
41.6    
41.9    
42.1    
42.4    
42.6    
42.9    
43.1    
43.4    
43.6    
43.9    
44.1    
44.4    
44.6    
44.9    
45.1    
45.4    
45.6    
45.9    
46.1    
46.4    
46.6    
46.9    
47.1    
47.4    
47.6    
47.9    
48.1    
48.4    
48.6    
48.9    
49.1    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.9    
51.1    
51.4    
51.6    
51.9    
52.1    
52.4    
52.6    
52.9    
53.1    
53.4    
53.6    
53.9    
54.1    
54.4    
54.6    
54.9    
55.1    
55.4    
55.6    
55.9    
56.1    
56.4    
56.6    
56.9    
57.1    
57.4    
57.6    
57.9    
58.1    
58.4    
58.6    
58.9    
59.1    
59.4    
59.6    
59.9    
60.2    
60.4    
60.7    
60.9    
61.2    
61.4    
61.7    
61.9    
62.2    
62.4    
62.7    
62.9    
63.2    
63.4    
63.7    
63.9    
64.2    
64.4    
64.7    
64.9    
65.2    
65.4    
65.7    
65.9    
66.2    
66.4    
66.7    
66.9    
67.2    
67.4    
67.7    
67.9    
68.2    
68.4    
68.7    
68.9    
69.2    
69.4    
69.7    
69.9    
70.2    
70.4    
70.7    
70.9    
71.2    
71.4    
71.7    
71.9    
72.2    
72.4    
72.7    
72.9    
73.2    
73.4    
73.7    
73.9    
74.2    
74.4    
74.7    
74.9    
75.2    
75.4    
75.7    
75.9    
76.2    
76.4    
76.7    
76.9    
77.2    
77.4    
77.7    
77.9    
78.2    
78.4    
78.7    
78.9    
79.2    
79.4    
79.7    
79.9    
80.2    
80.5    
80.7    
81.0    
81.2    
81.5    
81.7    
82.0    
82.2    
82.5    
82.7    
83.0    
83.2    
83.5    
83.7    
84.0    
84.2    
84.5    
84.7    
85.0    
85.2    
85.5    
85.7    
86.0    
86.2    
86.5    
86.7    
87.0    
87.2    
87.5    
87.7    
88.0    
88.2    
88.5    
88.7    
89.0    
89.2    
89.5    
89.7    
90.0    
90.2    
90.5    
90.7    
91.0    
91.2    
91.5    
91.7    
92.0    
92.2    
92.5    
92.7    
93.0    
93.2    
93.5    
93.7    
94.0    
94.2    
94.5    
94.7    
95.0    
95.2    
95.5    
95.7    
96.0    
96.2    
96.5    
96.7    
97.0    
97.2    
97.5    
97.7    
98.0    
98.2    
98.5    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 18334, rend_intergenic: 12803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36829, rend_intergenic: 31339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49486, rend_intergenic: 49310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51587, rend_intergenic: 49548  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62222, rend_intergenic: 51734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72525, rend_intergenic: 62366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82130, rend_intergenic: 79814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83161, rend_intergenic: 82762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86246, rend_intergenic: 83927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117346, rend_intergenic: 86903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120229, rend_intergenic: 117623  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126647, rend_intergenic: 120596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132632, rend_intergenic: 130089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148187, rend_intergenic: 137132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161204, rend_intergenic: 148736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177305, rend_intergenic: 161344  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179784, rend_intergenic: 177663  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195270, rend_intergenic: 182913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support