-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_14309637-14490750

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g12463.t1
Valid prediction for GlimmerHMM_glimmerT_18491-T1
Valid prediction for GlimmerHMM_glimmerT_18500-T1
Valid prediction for Augustus_model.g12461.t1
Valid prediction for snap_scaffold_7-snap.2717-T1
Valid prediction for GlimmerHMM_glimmerT_18498-T1
Valid prediction for Augustus_model.g12457.t1
Valid prediction for Augustus_model.g12464.t1
Valid prediction for GlimmerHMM_glimmerT_18501-T1
Valid prediction for snap_scaffold_7-snap.2705-T1
Valid prediction for snap_scaffold_7-snap.2688-T1
Valid prediction for snap_scaffold_7-snap.2708-T1
Valid prediction for GlimmerHMM_glimmerT_18508-T1
Valid prediction for Augustus_model.g12456.t1
Valid prediction for GlimmerHMM_glimmerT_18505-T1
Valid prediction for snap_scaffold_7-snap.2690-T1
Valid prediction for snap_scaffold_7-snap.2685-T1
Valid prediction for snap_scaffold_7-snap.2696-T1
Valid prediction for snap_scaffold_7-snap.2689-T1
Valid prediction for GlimmerHMM_glimmerT_18499-T1
Valid prediction for snap_scaffold_7-snap.2711-T1
Valid prediction for snap_scaffold_7-snap.2679-T1
Valid prediction for snap_scaffold_7-snap.2702-T1
Valid prediction for GlimmerHMM_glimmerT_18507-T1
Valid prediction for snap_scaffold_7-snap.2714-T1
Valid prediction for snap_scaffold_7-snap.2681-T1
Valid prediction for GlimmerHMM_glimmerT_18503-T1
Valid prediction for snap_scaffold_7-snap.2709-T1
Valid prediction for Augustus_model.g12462.t1
Valid prediction for snap_scaffold_7-snap.2716-T1
Valid prediction for snap_scaffold_7-snap.2695-T1
Valid prediction for snap_scaffold_7-snap.2682-T1
Valid prediction for snap_scaffold_7-snap.2713-T1
Valid prediction for GlimmerHMM_glimmerT_18502-T1
Valid prediction for Augustus_model.g12460.t1
Valid prediction for snap_scaffold_7-snap.2721-T1
Valid prediction for snap_scaffold_7-snap.2706-T1
Valid prediction for GlimmerHMM_glimmerT_18504-T1
Valid prediction for snap_scaffold_7-snap.2715-T1
Valid prediction for Augustus_model.g12458.t1
Valid prediction for snap_scaffold_7-snap.2710-T1
Valid prediction for snap_scaffold_7-snap.2700-T1
Valid prediction for Augustus_model.g12465.t1
Valid prediction for GlimmerHMM_glimmerT_18497-T1
Valid prediction for GlimmerHMM_glimmerT_18494-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.2699-T1
Valid prediction for GlimmerHMM_glimmerT_18488-T1
Valid prediction for snap_scaffold_7-snap.2718-T1
Valid prediction for snap_scaffold_7-snap.2701-T1
Valid prediction for GlimmerHMM_glimmerT_18489-T1
Valid prediction for Augustus_model.g12459.t1
Valid prediction for snap_scaffold_7-snap.2703-T1
Valid prediction for snap_scaffold_7-snap.2719-T1
Valid prediction for snap_scaffold_7-snap.2691-T1
Valid prediction for snap_scaffold_7-snap.2698-T1
Valid prediction for GlimmerHMM_glimmerT_18492-T1
Valid prediction for snap_scaffold_7-snap.2704-T1
Valid prediction for GlimmerHMM_glimmerT_18493-T1
Valid prediction for snap_scaffold_7-snap.2687-T1
Valid prediction for snap_scaffold_7-snap.2692-T1
Valid prediction for snap_scaffold_7-snap.2693-T1
Valid prediction for GlimmerHMM_glimmerT_18496-T1
Valid prediction for GlimmerHMM_glimmerT_18490-T1
Valid prediction for GlimmerHMM_glimmerT_18506-T1
Valid prediction for Augustus_model.g12466.t1
Valid prediction for snap_scaffold_7-snap.2697-T1
Valid prediction for snap_scaffold_7-snap.2684-T1
Valid prediction for GlimmerHMM_glimmerT_18495-T1
Valid prediction for snap_scaffold_7-snap.2720-T1
Valid prediction for snap_scaffold_7-snap.2680-T1
Valid prediction for GlimmerHMM_glimmerT_18487-T1
Valid prediction for snap_scaffold_7-snap.2686-T1
Valid prediction for snap_scaffold_7-snap.2694-T1
Valid prediction for snap_scaffold_7-snap.2712-T1
Valid prediction for snap_scaffold_7-snap.2707-T1
Valid prediction for snap_scaffold_7-snap.2683-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6960, rend_intergenic: 6778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17550, rend_intergenic: 6975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26449, rend_intergenic: 18171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29994, rend_intergenic: 28230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33185, rend_intergenic: 30845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48323, rend_intergenic: 40409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60495, rend_intergenic: 56210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66821, rend_intergenic: 62869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81684, rend_intergenic: 80710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96643, rend_intergenic: 91830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106488, rend_intergenic: 103278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111119, rend_intergenic: 108559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121694, rend_intergenic: 111917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128376, rend_intergenic: 126790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 181114
-exon list size: 246


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.2    
3.6    
4.0    
4.4    
4.8    
5.2    
5.6    
6.0    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.7    
10.1    
10.5    
10.9    
11.3    
11.7    
12.1    
12.5    
12.9    
13.3    
13.7    
14.1    
14.5    
14.9    
15.3    
15.7    
16.1    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
19.0    
19.4    
19.8    
20.2    
20.6    
21.0    
21.4    
21.8    
22.2    
22.6    
23.0    
23.4    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.6    
27.0    
27.4    
27.8    
28.2    
28.6    
29.0    
29.4    
29.8    
30.2    
30.6    
31.0    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.9    
34.3    
34.7    
35.1    
35.5    
35.9    
36.3    
36.7    
37.1    
37.5    
37.9    
38.3    
38.7    
39.1    
39.5    
39.9    
40.3    
40.7    
41.1    
41.5    
41.9    
42.3    
42.7    
43.1    
43.5    
44.0    
44.4    
44.8    
45.2    
45.6    
46.0    
46.4    
46.8    
47.2    
47.6    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.4    
52.8    
53.2    
53.6    
54.0    
54.4    
54.8    
55.2    
55.6    
56.0    
56.5    
56.9    
57.3    
57.7    
58.1    
58.5    
58.9    
59.3    
59.7    
60.1    
60.5    
60.9    
61.3    
61.7    
62.1    
62.5    
62.9    
63.3    
63.7    
64.1    
64.5    
64.9    
65.3    
65.7    
66.1    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
69.0    
69.4    
69.8    
70.2    
70.6    
71.0    
71.4    
71.8    
72.2    
72.6    
73.0    
73.4    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.6    
77.0    
77.4    
77.8    
78.2    
78.6    
79.0    
79.4    
79.8    
80.2    
80.6    
81.0    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
83.9    
84.3    
84.7    
85.1    
85.5    
85.9    
86.3    
86.7    
87.1    
87.5    
87.9    
88.3    
88.7    
89.1    
89.5    
89.9    
90.3    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
94.0    
94.4    
94.8    
95.2    
95.6    
96.0    
96.4    
96.8    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 6960, rend_intergenic: 6778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17550, rend_intergenic: 6975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26449, rend_intergenic: 18171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29994, rend_intergenic: 28230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33185, rend_intergenic: 30845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48323, rend_intergenic: 40409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60495, rend_intergenic: 56210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66821, rend_intergenic: 62869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81684, rend_intergenic: 80710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96643, rend_intergenic: 91830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106488, rend_intergenic: 103278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111119, rend_intergenic: 108559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121694, rend_intergenic: 111917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128376, rend_intergenic: 126790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support