-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_14062652-14316413

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_18465-T1
Valid prediction for snap_scaffold_7-snap.2659-T1
Valid prediction for GlimmerHMM_glimmerT_18458-T1
Valid prediction for snap_scaffold_7-snap.2669-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.2653-T1
Valid prediction for GlimmerHMM_glimmerT_18479-T1
Valid prediction for snap_scaffold_7-snap.2666-T1
Valid prediction for snap_scaffold_7-snap.2652-T1
Valid prediction for Augustus_model.g12445.t1
Valid prediction for GlimmerHMM_glimmerT_18467-T1
Valid prediction for GlimmerHMM_glimmerT_18470-T1
Valid prediction for snap_scaffold_7-snap.2668-T1
Valid prediction for Augustus_model.g12451.t1
Valid prediction for GlimmerHMM_glimmerT_18456-T1
Valid prediction for GlimmerHMM_glimmerT_18476-T1
Valid prediction for snap_scaffold_7-snap.2656-T1
Valid prediction for GlimmerHMM_glimmerT_18484-T1
Valid prediction for Augustus_model.g12453.t1
Valid prediction for snap_scaffold_7-snap.2646-T1
Valid prediction for snap_scaffold_7-snap.2661-T1
Valid prediction for Augustus_model.g12454.t1
Valid prediction for snap_scaffold_7-snap.2677-T1
Valid prediction for snap_scaffold_7-snap.2635-T1
Valid prediction for snap_scaffold_7-snap.2663-T1
Valid prediction for snap_scaffold_7-snap.2655-T1
Valid prediction for Augustus_model.g12444.t1
Valid prediction for GlimmerHMM_glimmerT_18462-T1
Valid prediction for GlimmerHMM_glimmerT_18463-T1
Valid prediction for GlimmerHMM_glimmerT_18481-T1
Valid prediction for snap_scaffold_7-snap.2658-T1
Valid prediction for GlimmerHMM_glimmerT_18475-T1
Valid prediction for snap_scaffold_7-snap.2642-T1
Valid prediction for snap_scaffold_7-snap.2670-T1
Valid prediction for GlimmerHMM_glimmerT_18472-T1
Valid prediction for GlimmerHMM_glimmerT_18460-T1
Valid prediction for GlimmerHMM_glimmerT_18478-T1
Valid prediction for snap_scaffold_7-snap.2644-T1
Valid prediction for snap_scaffold_7-snap.2672-T1
Valid prediction for snap_scaffold_7-snap.2637-T1
Valid prediction for snap_scaffold_7-snap.2664-T1
Valid prediction for snap_scaffold_7-snap.2665-T1
Valid prediction for GlimmerHMM_glimmerT_18468-T1
Valid prediction for Augustus_model.g12449.t1
Valid prediction for snap_scaffold_7-snap.2667-T1
Valid prediction for snap_scaffold_7-snap.2633-T1
Valid prediction for GlimmerHMM_glimmerT_18457-T1
Valid prediction for snap_scaffold_7-snap.2649-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_51335.p1
Valid prediction for Augustus_model.g12455.t1
Valid prediction for snap_scaffold_7-snap.2675-T1
Valid prediction for Augustus_model.g12446.t1
Valid prediction for snap_scaffold_7-snap.2674-T1
Valid prediction for GlimmerHMM_glimmerT_18461-T1
Valid prediction for snap_scaffold_7-snap.2648-T1
Valid prediction for GlimmerHMM_glimmerT_18455-T1
Valid prediction for snap_scaffold_7-snap.2645-T1
Valid prediction for snap_scaffold_7-snap.2676-T1
Valid prediction for snap_scaffold_7-snap.2654-T1
Valid prediction for GlimmerHMM_glimmerT_18471-T1
Valid prediction for GlimmerHMM_glimmerT_18482-T1
Valid prediction for GlimmerHMM_glimmerT_18477-T1
Valid prediction for snap_scaffold_7-snap.2638-T1
Valid prediction for snap_scaffold_7-snap.2639-T1
Valid prediction for Augustus_model.g12452.t1
Valid prediction for snap_scaffold_7-snap.2671-T1
Valid prediction for GlimmerHMM_glimmerT_18474-T1
Valid prediction for snap_scaffold_7-snap.2636-T1
Valid prediction for GlimmerHMM_glimmerT_18485-T1
Valid prediction for GlimmerHMM_glimmerT_18473-T1
Valid prediction for snap_scaffold_7-snap.2657-T1
Valid prediction for CodingQuarry_transcript_57715-T1
Valid prediction for GlimmerHMM_glimmerT_18466-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g12448.t1
Valid prediction for snap_scaffold_7-snap.2634-T1
Valid prediction for snap_scaffold_7-snap.2641-T1
Valid prediction for snap_scaffold_7-snap.2662-T1
Valid prediction for Augustus_model.g12450.t1
Valid prediction for snap_scaffold_7-snap.2673-T1
Valid prediction for GlimmerHMM_glimmerT_18480-T1
Valid prediction for snap_scaffold_7-snap.2651-T1
Valid prediction for snap_scaffold_7-snap.2640-T1
Valid prediction for GlimmerHMM_glimmerT_18464-T1
Valid prediction for snap_scaffold_7-snap.2643-T1
Valid prediction for GlimmerHMM_glimmerT_18459-T1
Valid prediction for Augustus_model.g12447.t1
Valid prediction for snap_scaffold_7-snap.2678-T1
Valid prediction for snap_scaffold_7-snap.2647-T1
Valid prediction for snap_scaffold_7-snap.2650-T1
Valid prediction for snap_scaffold_7-snap.2660-T1
Valid prediction for GlimmerHMM_glimmerT_18469-T1
Valid prediction for GlimmerHMM_glimmerT_18483-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12494, rend_intergenic: 9472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25081, rend_intergenic: 16657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39061, rend_intergenic: 29030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41566, rend_intergenic: 39845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51856, rend_intergenic: 42835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54486, rend_intergenic: 52209  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55906, rend_intergenic: 54570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58209, rend_intergenic: 56586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66622, rend_intergenic: 58504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74020, rend_intergenic: 67287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97628, rend_intergenic: 83029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156512, rend_intergenic: 146988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170529, rend_intergenic: 157313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217423, rend_intergenic: 213274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225456, rend_intergenic: 217504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243866, rend_intergenic: 239307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 246707, rend_intergenic: 244801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 253762
-exon list size: 357


building trellis

0.3    
0.6    
0.8    
1.1    
1.4    
1.7    
1.9    
2.2    
2.5    
2.8    
3.1    
3.3    
3.6    
3.9    
4.2    
4.5    
4.7    
5.0    
5.3    
5.6    
5.8    
6.1    
6.4    
6.7    
7.0    
7.2    
7.5    
7.8    
8.1    
8.4    
8.6    
8.9    
9.2    
9.5    
9.7    
10.0    
10.3    
10.6    
10.9    
11.1    
11.4    
11.7    
12.0    
12.3    
12.5    
12.8    
13.1    
13.4    
13.6    
13.9    
14.2    
14.5    
14.8    
15.0    
15.3    
15.6    
15.9    
16.2    
16.4    
16.7    
17.0    
17.3    
17.5    
17.8    
18.1    
18.4    
18.7    
18.9    
19.2    
19.5    
19.8    
20.1    
20.3    
20.6    
20.9    
21.2    
21.4    
21.7    
22.0    
22.3    
22.6    
22.8    
23.1    
23.4    
23.7    
24.0    
24.2    
24.5    
24.8    
25.1    
25.3    
25.6    
25.9    
26.2    
26.5    
26.7    
27.0    
27.3    
27.6    
27.9    
28.1    
28.4    
28.7    
29.0    
29.2    
29.5    
29.8    
30.1    
30.4    
30.6    
30.9    
31.2    
31.5    
31.8    
32.0    
32.3    
32.6    
32.9    
33.1    
33.4    
33.7    
34.0    
34.3    
34.5    
34.8    
35.1    
35.4    
35.7    
35.9    
36.2    
36.5    
36.8    
37.0    
37.3    
37.6    
37.9    
38.2    
38.4    
38.7    
39.0    
39.3    
39.6    
39.8    
40.1    
40.4    
40.7    
40.9    
41.2    
41.5    
41.8    
42.1    
42.3    
42.6    
42.9    
43.2    
43.5    
43.7    
44.0    
44.3    
44.6    
44.8    
45.1    
45.4    
45.7    
46.0    
46.2    
46.5    
46.8    
47.1    
47.4    
47.6    
47.9    
48.2    
48.5    
48.7    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.3    
51.5    
51.8    
52.1    
52.4    
52.6    
52.9    
53.2    
53.5    
53.8    
54.0    
54.3    
54.6    
54.9    
55.2    
55.4    
55.7    
56.0    
56.3    
56.5    
56.8    
57.1    
57.4    
57.7    
57.9    
58.2    
58.5    
58.8    
59.1    
59.3    
59.6    
59.9    
60.2    
60.4    
60.7    
61.0    
61.3    
61.6    
61.8    
62.1    
62.4    
62.7    
63.0    
63.2    
63.5    
63.8    
64.1    
64.3    
64.6    
64.9    
65.2    
65.5    
65.7    
66.0    
66.3    
66.6    
66.9    
67.1    
67.4    
67.7    
68.0    
68.2    
68.5    
68.8    
69.1    
69.4    
69.6    
69.9    
70.2    
70.5    
70.8    
71.0    
71.3    
71.6    
71.9    
72.1    
72.4    
72.7    
73.0    
73.3    
73.5    
73.8    
74.1    
74.4    
74.7    
74.9    
75.2    
75.5    
75.8    
76.0    
76.3    
76.6    
76.9    
77.2    
77.4    
77.7    
78.0    
78.3    
78.6    
78.8    
79.1    
79.4    
79.7    
79.9    
80.2    
80.5    
80.8    
81.1    
81.3    
81.6    
81.9    
82.2    
82.5    
82.7    
83.0    
83.3    
83.6    
83.8    
84.1    
84.4    
84.7    
85.0    
85.2    
85.5    
85.8    
86.1    
86.4    
86.6    
86.9    
87.2    
87.5    
87.7    
88.0    
88.3    
88.6    
88.9    
89.1    
89.4    
89.7    
90.0    
90.3    
90.5    
90.8    
91.1    
91.4    
91.6    
91.9    
92.2    
92.5    
92.8    
93.0    
93.3    
93.6    
93.9    
94.2    
94.4    
94.7    
95.0    
95.3    
95.5    
95.8    
96.1    
96.4    
96.7    
96.9    
97.2    
97.5    
97.8    
98.1    
98.3    
98.6    
98.9    
99.2    
99.4    
99.7    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 12494, rend_intergenic: 9472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25081, rend_intergenic: 16657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39061, rend_intergenic: 29030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41566, rend_intergenic: 39845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51856, rend_intergenic: 42835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54486, rend_intergenic: 52209  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55906, rend_intergenic: 54570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58209, rend_intergenic: 56586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66622, rend_intergenic: 58504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74020, rend_intergenic: 67287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97628, rend_intergenic: 83029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156512, rend_intergenic: 146988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170529, rend_intergenic: 157313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217423, rend_intergenic: 213274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225456, rend_intergenic: 217504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243866, rend_intergenic: 239307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 246707, rend_intergenic: 244801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support