-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_7/scaffold_7_11235304-11422739

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_7-snap.2152-T1
Valid prediction for snap_scaffold_7-snap.2155-T1
Valid prediction for snap_scaffold_7-snap.2148-T1
Valid prediction for snap_scaffold_7-snap.2154-T1
Valid prediction for GlimmerHMM_glimmerT_18132-T1
Valid prediction for GlimmerHMM_glimmerT_18138-T1
Valid prediction for pasa_asmbl_50174.p1
Valid prediction for CodingQuarry_transcript_57638-T1
Valid prediction for snap_scaffold_7-snap.2151-T1
Valid prediction for GlimmerHMM_glimmerT_18123-T1
Valid prediction for Augustus_model.g12196.t1
Valid prediction for GlimmerHMM_glimmerT_18128-T1
Valid prediction for CodingQuarry_transcript_57634-T1
Valid prediction for GlimmerHMM_glimmerT_18126-T1
Valid prediction for snap_scaffold_7-snap.2161-T1
Valid prediction for snap_scaffold_7-snap.2153-T1
Valid prediction for Augustus_model.g12193.t1
Valid prediction for Augustus_model.g12192.t1
Valid prediction for GlimmerHMM_glimmerT_18136-T1
Valid prediction for snap_scaffold_7-snap.2170-T1
Valid prediction for GlimmerHMM_glimmerT_18134-T1
Valid prediction for Augustus_model.g12182.t1
Valid prediction for snap_scaffold_7-snap.2164-T1
Valid prediction for Augustus_model.g12183.t1
Valid prediction for snap_scaffold_7-snap.2177-T1
Valid prediction for GlimmerHMM_glimmerT_18133-T1
Valid prediction for Augustus_model.g12190.t1
Valid prediction for snap_scaffold_7-snap.2143-T1
Valid prediction for snap_scaffold_7-snap.2159-T1
Valid prediction for snap_scaffold_7-snap.2178-T1
Valid prediction for Augustus_model.g12188.t1
Valid prediction for HiQ_model.g12197.t1
Valid prediction for GlimmerHMM_glimmerT_18116-T1
Valid prediction for HiQ_model.g12189.t1
Valid prediction for CodingQuarry_transcript_57636-T1
Valid prediction for GlimmerHMM_glimmerT_18137-T1
Valid prediction for Augustus_model.g12194.t1
Couldn't classify 61172, 61242
Sorry, prediction pasa_asmbl_50167.p1 fails validation.
(GAT)	 AC	61172-61242	GT	AAG
(AAC)	 AG	63243-64962	GT	AGG
-recovered pasa_asmbl_50167.p1, terminal, 63243, 64962
-recovered pasa_asmbl_50167.p1, internal, 63243, 64962
Valid prediction for CodingQuarry_transcript_57637-T1
Valid prediction for snap_scaffold_7-snap.2167-T1
Valid prediction for snap_scaffold_7-snap.2175-T1
Valid prediction for GlimmerHMM_glimmerT_18129-T1
Valid prediction for snap_scaffold_7-snap.2180-T1
Valid prediction for snap_scaffold_7-snap.2147-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.2179-T1
Valid prediction for snap_scaffold_7-snap.2181-T1
Valid prediction for GlimmerHMM_glimmerT_18119-T1
Valid prediction for GlimmerHMM_glimmerT_18135-T1
Valid prediction for snap_scaffold_7-snap.2156-T1
Valid prediction for Augustus_model.g12181.t1
Valid prediction for Augustus_model.g12198.t1
Valid prediction for snap_scaffold_7-snap.2162-T1
Valid prediction for snap_scaffold_7-snap.2150-T1
Valid prediction for snap_scaffold_7-snap.2144-T1
Valid prediction for snap_scaffold_7-snap.2163-T1
Valid prediction for GlimmerHMM_glimmerT_18115-T1
Valid prediction for snap_scaffold_7-snap.2146-T1
Valid prediction for GlimmerHMM_glimmerT_18125-T1
Valid prediction for GlimmerHMM_glimmerT_18117-T1
Valid prediction for snap_scaffold_7-snap.2176-T1
Valid prediction for Augustus_model.g12185.t1
Valid prediction for snap_scaffold_7-snap.2165-T1
Valid prediction for GlimmerHMM_glimmerT_18124-T1
Valid prediction for snap_scaffold_7-snap.2174-T1
Valid prediction for GlimmerHMM_glimmerT_18120-T1
Valid prediction for GlimmerHMM_glimmerT_18127-T1
Valid prediction for snap_scaffold_7-snap.2169-T1
Valid prediction for snap_scaffold_7-snap.2166-T1
Valid prediction for Augustus_model.g12191.t1
Valid prediction for Augustus_model.g12187.t1
Valid prediction for GlimmerHMM_glimmerT_18130-T1
Valid prediction for snap_scaffold_7-snap.2168-T1
Valid prediction for GlimmerHMM_glimmerT_18122-T1
Valid prediction for Augustus_model.g12195.t1
Valid prediction for GlimmerHMM_glimmerT_18121-T1
Valid prediction for snap_scaffold_7-snap.2149-T1
Valid prediction for snap_scaffold_7-snap.2157-T1
Valid prediction for GlimmerHMM_glimmerT_18118-T1
Valid prediction for snap_scaffold_7-snap.2140-T1
Valid prediction for GlimmerHMM_glimmerT_18114-T1
Valid prediction for snap_scaffold_7-snap.2171-T1
Valid prediction for GlimmerHMM_glimmerT_18131-T1
Valid prediction for snap_scaffold_7-snap.2145-T1
Valid prediction for snap_scaffold_7-snap.2141-T1
Valid prediction for Augustus_model.g12186.t1
Valid prediction for snap_scaffold_7-snap.2158-T1
Valid prediction for snap_scaffold_7-snap.2142-T1
Valid prediction for snap_scaffold_7-snap.2173-T1
Valid prediction for GlimmerHMM_glimmerT_18139-T1
Valid prediction for snap_scaffold_7-snap.2160-T1
Valid prediction for snap_scaffold_7-snap.2172-T1
Valid prediction for Augustus_model.g12184.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9423, rend_intergenic: 7096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10868, rend_intergenic: 10028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27623, rend_intergenic: 21289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99310, rend_intergenic: 86132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105349, rend_intergenic: 101124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107370, rend_intergenic: 107178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113257, rend_intergenic: 108832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118952, rend_intergenic: 113316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133627, rend_intergenic: 128487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139452, rend_intergenic: 137528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153261, rend_intergenic: 142194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156313, rend_intergenic: 154523  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163251, rend_intergenic: 156783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175203, rend_intergenic: 164314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 187436
-exon list size: 292


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.0    
2.4    
2.7    
3.1    
3.4    
3.7    
4.1    
4.4    
4.8    
5.1    
5.4    
5.8    
6.1    
6.5    
6.8    
7.1    
7.5    
7.8    
8.2    
8.5    
8.8    
9.2    
9.5    
9.9    
10.2    
10.5    
10.9    
11.2    
11.6    
11.9    
12.2    
12.6    
12.9    
13.3    
13.6    
13.9    
14.3    
14.6    
15.0    
15.3    
15.6    
16.0    
16.3    
16.7    
17.0    
17.3    
17.7    
18.0    
18.4    
18.7    
19.0    
19.4    
19.7    
20.1    
20.4    
20.7    
21.1    
21.4    
21.8    
22.1    
22.4    
22.8    
23.1    
23.5    
23.8    
24.1    
24.5    
24.8    
25.2    
25.5    
25.9    
26.2    
26.5    
26.9    
27.2    
27.6    
27.9    
28.2    
28.6    
28.9    
29.3    
29.6    
29.9    
30.3    
30.6    
31.0    
31.3    
31.6    
32.0    
32.3    
32.7    
33.0    
33.3    
33.7    
34.0    
34.4    
34.7    
35.0    
35.4    
35.7    
36.1    
36.4    
36.7    
37.1    
37.4    
37.8    
38.1    
38.4    
38.8    
39.1    
39.5    
39.8    
40.1    
40.5    
40.8    
41.2    
41.5    
41.8    
42.2    
42.5    
42.9    
43.2    
43.5    
43.9    
44.2    
44.6    
44.9    
45.2    
45.6    
45.9    
46.3    
46.6    
46.9    
47.3    
47.6    
48.0    
48.3    
48.6    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.4    
51.7    
52.0    
52.4    
52.7    
53.1    
53.4    
53.7    
54.1    
54.4    
54.8    
55.1    
55.4    
55.8    
56.1    
56.5    
56.8    
57.1    
57.5    
57.8    
58.2    
58.5    
58.8    
59.2    
59.5    
59.9    
60.2    
60.5    
60.9    
61.2    
61.6    
61.9    
62.2    
62.6    
62.9    
63.3    
63.6    
63.9    
64.3    
64.6    
65.0    
65.3    
65.6    
66.0    
66.3    
66.7    
67.0    
67.3    
67.7    
68.0    
68.4    
68.7    
69.0    
69.4    
69.7    
70.1    
70.4    
70.7    
71.1    
71.4    
71.8    
72.1    
72.4    
72.8    
73.1    
73.5    
73.8    
74.1    
74.5    
74.8    
75.2    
75.5    
75.9    
76.2    
76.5    
76.9    
77.2    
77.6    
77.9    
78.2    
78.6    
78.9    
79.3    
79.6    
79.9    
80.3    
80.6    
81.0    
81.3    
81.6    
82.0    
82.3    
82.7    
83.0    
83.3    
83.7    
84.0    
84.4    
84.7    
85.0    
85.4    
85.7    
86.1    
86.4    
86.7    
87.1    
87.4    
87.8    
88.1    
88.4    
88.8    
89.1    
89.5    
89.8    
90.1    
90.5    
90.8    
91.2    
91.5    
91.8    
92.2    
92.5    
92.9    
93.2    
93.5    
93.9    
94.2    
94.6    
94.9    
95.2    
95.6    
95.9    
96.3    
96.6    
96.9    
97.3    
97.6    
98.0    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 9423, rend_intergenic: 7096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10868, rend_intergenic: 10028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27623, rend_intergenic: 21289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99310, rend_intergenic: 86132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105349, rend_intergenic: 101124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107370, rend_intergenic: 107178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113257, rend_intergenic: 108832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118952, rend_intergenic: 113316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133627, rend_intergenic: 128487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139452, rend_intergenic: 137528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153261, rend_intergenic: 142194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156313, rend_intergenic: 154523  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163251, rend_intergenic: 156783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175203, rend_intergenic: 164314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support