-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_698

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4455, 4634
Sorry, prediction GlimmerHMM_glimmerT_60632-T1 fails validation.
(ATG)	 CC	4103-4231	GT	AGG
(ACG)	 AG	4455-4634	GT	GGG
-recovered GlimmerHMM_glimmerT_60632-T1, initial, 4103, 4231
-recovered GlimmerHMM_glimmerT_60632-T1, internal, 4455, 4634
Couldn't classify 4455, 4634
Sorry, prediction Augustus_model.g40135.t1 fails validation.
(ATG)	 CC	4103-4231	GT	AGG
(ACG)	 AG	4455-4634	GT	GGG
-recovered Augustus_model.g40135.t1, initial, 4103, 4231
-recovered Augustus_model.g40135.t1, internal, 4455, 4634
Valid prediction for GlimmerHMM_glimmerT_60630-T1
Valid prediction for GlimmerHMM_glimmerT_60631-T1
Couldn't classify 4455, 4634
Sorry, prediction pasa_asmbl_49530.p1 fails validation.
(ATG)	 CC	4103-4231	GT	AGG
(ACG)	 AG	4455-4634	GT	GGG
-recovered pasa_asmbl_49530.p1, initial, 4103, 4231
-recovered pasa_asmbl_49530.p1, internal, 4455, 4634
Couldn't classify 73, 143
Sorry, prediction Augustus_model.g40134.t1 fails validation.
(TAC)	 AG	73-143	GT	GAG
(TAT)	 AG	268-437	GT	GGG
(ACT)	 AG	779-932	GT	CGG
(GAA)	 AG	1318-1926	CC	AGC
-recovered Augustus_model.g40134.t1, terminal, 1318, 1926
-recovered Augustus_model.g40134.t1, internal, 73, 143
-recovered Augustus_model.g40134.t1, internal, 268, 437
-recovered Augustus_model.g40134.t1, internal, 779, 932
Couldn't classify 4455, 4634
Sorry, prediction snap_scaffold_698-snap.2-T1 fails validation.
(ATG)	 CC	4103-4231	GT	AGG
(ACG)	 AG	4455-4634	GT	GGG
-recovered snap_scaffold_698-snap.2-T1, initial, 4103, 4231
-recovered snap_scaffold_698-snap.2-T1, internal, 4455, 4634
Couldn't classify 1408, 1851
Sorry, prediction pasa_asmbl_49528.p1 fails validation.
(GAA)	 AG	1408-1851	GG	AGG
Couldn't classify 93, 143
Sorry, prediction snap_scaffold_698-snap.1-T1 fails validation.
(GGG)	 AG	93-143	GT	GAG
(TAT)	 AG	268-437	GT	GGG
(ACT)	 AG	779-932	GT	CGG
(GAA)	 AG	1318-1926	CC	AGC
-recovered snap_scaffold_698-snap.1-T1, terminal, 1318, 1926
-recovered snap_scaffold_698-snap.1-T1, internal, 93, 143
-recovered snap_scaffold_698-snap.1-T1, internal, 268, 437
-recovered snap_scaffold_698-snap.1-T1, internal, 779, 932

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4938
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support