-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_693

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4390, 4437
Sorry, prediction GlimmerHMM_glimmerT_60626-T1 fails validation.
(ATG)	 TC	71-208	GT	AGG
(CAT)	 AG	363-474	GT	AGG
(TTC)	 AG	1151-1264	GT	ATG
(CCC)	 AG	1713-1918	GT	AGG
(GTG)	 AG	3586-3729	GT	CGG
(CAG)	 AG	3949-4078	GT	AGG
(GTG)	 AG	4390-4437	GT	CAG
-recovered GlimmerHMM_glimmerT_60626-T1, initial, 71, 208
-recovered GlimmerHMM_glimmerT_60626-T1, internal, 363, 474
-recovered GlimmerHMM_glimmerT_60626-T1, internal, 1151, 1264
-recovered GlimmerHMM_glimmerT_60626-T1, internal, 1713, 1918
-recovered GlimmerHMM_glimmerT_60626-T1, internal, 3586, 3729
-recovered GlimmerHMM_glimmerT_60626-T1, internal, 3949, 4078
-recovered GlimmerHMM_glimmerT_60626-T1, internal, 4390, 4437
Couldn't classify 3586, 3729
Couldn't classify 4390, 4436
Sorry, prediction pasa_asmbl_49526.p2 fails validation.
(GTG)	 AG	3586-3729	GT	CGG
(CAG)	 AG	3949-4078	GT	AGG
(GTG)	 AG	4390-4436	AG	ACA
-recovered pasa_asmbl_49526.p2, internal, 3586, 3729
-recovered pasa_asmbl_49526.p2, internal, 3949, 4078
Couldn't classify 111, 208
Couldn't classify 4390, 4437
Sorry, prediction Augustus_model.g40133.t1 fails validation.
(ACG)	 AG	111-208	GT	AGG
(CAT)	 AG	363-474	GT	AGG
(TTC)	 AG	1151-1264	GT	ATG
(CCC)	 AG	1713-1918	GT	AGG
(GTG)	 AG	3586-3729	GT	CGG
(CAG)	 AG	3949-4078	GT	AGG
(GTG)	 AG	4390-4437	GT	CAG
-recovered Augustus_model.g40133.t1, internal, 111, 208
-recovered Augustus_model.g40133.t1, internal, 363, 474
-recovered Augustus_model.g40133.t1, internal, 1151, 1264
-recovered Augustus_model.g40133.t1, internal, 1713, 1918
-recovered Augustus_model.g40133.t1, internal, 3586, 3729
-recovered Augustus_model.g40133.t1, internal, 3949, 4078
-recovered Augustus_model.g40133.t1, internal, 4390, 4437
Valid prediction for snap_scaffold_693-snap.2-T1
Couldn't classify 134, 208
Couldn't classify 1713, 1879
Sorry, prediction pasa_asmbl_49525.p1 fails validation.
(TGT)	 CC	134-208	GT	AGG
(CAT)	 AG	363-474	GT	AGG
(TTC)	 AG	1151-1264	GT	ATG
(CCC)	 AG	1713-1879	CC	GGC
-recovered pasa_asmbl_49525.p1, internal, 363, 474
-recovered pasa_asmbl_49525.p1, internal, 1151, 1264

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_693-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4479, rend_intergenic: 1119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4961
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4479, rend_intergenic: 1119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support