-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_69

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59674-T1
Valid prediction for GlimmerHMM_glimmerT_59677-T1
Couldn't classify 23588, 23744
Sorry, prediction GlimmerHMM_glimmerT_59678-T1 fails validation.
(ATG)	 GA	18536-18609	GT	AGG
(CAG)	 AG	23588-23744	GT	GGG
-recovered GlimmerHMM_glimmerT_59678-T1, initial, 18536, 18609
-recovered GlimmerHMM_glimmerT_59678-T1, internal, 23588, 23744
Valid prediction for snap_scaffold_69-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_69-snap.3-T1
Valid prediction for Augustus_model.g39543.t1
Couldn't classify 24565, 24651
Sorry, prediction snap_scaffold_69-snap.1-T1 fails validation.
(ATG)	 AG	18194-18220	GT	TGG
(CGT)	 AG	20399-20501	GT	CTG
(GCG)	 AG	21593-21679	GT	CAG
(AGA)	 AG	22037-22164	GT	AGG
(GGG)	 AG	22543-22612	GT	TGG
(GGC)	 AG	23466-23572	GT	TGG
(ATC)	 AG	24565-24651	GT	TAG
-recovered snap_scaffold_69-snap.1-T1, initial, 18194, 18220
-recovered snap_scaffold_69-snap.1-T1, internal, 18194, 18220
-recovered snap_scaffold_69-snap.1-T1, internal, 20399, 20501
-recovered snap_scaffold_69-snap.1-T1, internal, 21593, 21679
-recovered snap_scaffold_69-snap.1-T1, internal, 22037, 22164
-recovered snap_scaffold_69-snap.1-T1, internal, 22543, 22612
-recovered snap_scaffold_69-snap.1-T1, internal, 23466, 23572
-recovered snap_scaffold_69-snap.1-T1, internal, 24565, 24651
Valid prediction for GlimmerHMM_glimmerT_59675-T1
Valid prediction for GlimmerHMM_glimmerT_59676-T1
Valid prediction for Augustus_model.g39542.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6807, rend_intergenic: 1256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 25000
-exon list size: 74


building trellis

1.3    
2.6    
3.9    
5.3    
6.6    
7.9    
9.2    
10.5    
11.8    
13.2    
14.5    
15.8    
17.1    
18.4    
19.7    
21.1    
22.4    
23.7    
25.0    
26.3    
27.6    
28.9    
30.3    
31.6    
32.9    
34.2    
35.5    
36.8    
38.2    
39.5    
40.8    
42.1    
43.4    
44.7    
46.1    
47.4    
48.7    
50.0    
51.3    
52.6    
53.9    
55.3    
56.6    
57.9    
59.2    
60.5    
61.8    
63.2    
64.5    
65.8    
67.1    
68.4    
69.7    
71.1    
72.4    
73.7    
75.0    
76.3    
77.6    
78.9    
80.3    
81.6    
82.9    
84.2    
85.5    
86.8    
88.2    
89.5    
90.8    
92.1    
93.4    
94.7    
96.1    
97.4    
98.7    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 6807, rend_intergenic: 1256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support