-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_689

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1817, 1895
Couldn't classify 4729, 4853
Sorry, prediction snap_scaffold_689-snap.1-T1 fails validation.
(ATC)	 AG	1817-1895	GT	AGG
(GAG)	 AG	4321-4413	GT	CGG
(GAC)	 AG	4729-4853	GT	ATG
-recovered snap_scaffold_689-snap.1-T1, internal, 1817, 1895
-recovered snap_scaffold_689-snap.1-T1, internal, 4321, 4413
-recovered snap_scaffold_689-snap.1-T1, internal, 4729, 4853
Couldn't classify 1668, 1717
Sorry, prediction Augustus_model.g40132.t1 fails validation.
(GAG)	 AG	1668-1717	GT	AGG
(ATC)	 AG	1817-1895	GT	AGG
(AAA)	 AG	1983-2134	GT	CAG
(GCG)	 AG	2625-2771	CT	AGC
-recovered Augustus_model.g40132.t1, terminal, 2625, 2771
-recovered Augustus_model.g40132.t1, internal, 1668, 1717
-recovered Augustus_model.g40132.t1, internal, 1817, 1895
-recovered Augustus_model.g40132.t1, internal, 1983, 2134

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4987
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support