-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_687

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 402, 497
Sorry, prediction snap_scaffold_687-snap.1-T1 fails validation.
(GAA)	 AG	402-497	GT	AGG
(ATA)	 AG	1099-1322	GT	TAG
(CAA)	 AG	3182-3338	GT	AGG
add_exon() Sorry, snap_scaffold_687-snap.1-T1 3182-3338-terminal-3 is invalid.
-recovered snap_scaffold_687-snap.1-T1, terminal, 3182, 3338
-recovered snap_scaffold_687-snap.1-T1, internal, 402, 497
-recovered snap_scaffold_687-snap.1-T1, internal, 1099, 1322
-recovered snap_scaffold_687-snap.1-T1, internal, 3182, 3338

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1785, 1836
Couldn't classify 3608, 3900
Sorry, prediction snap_scaffold_687-snap.2-T1 fails validation.
(ATC)	 AG	1785-1836	GT	GTG
(GTT)	 AG	3608-3900	GT	CTG
-recovered snap_scaffold_687-snap.2-T1, internal, 1785, 1836
-recovered snap_scaffold_687-snap.2-T1, internal, 3608, 3900
Valid prediction for GlimmerHMM_glimmerT_60622-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60622-T1 3608-3932-terminal-1 is invalid.
Couldn't classify 3608, 3900
Sorry, prediction Augustus_model.g40131.t1 fails validation.
(ATG)	 AA	2378-2413	GT	AGG
(GTC)	 AG	2743-2759	GT	CAG
(GTT)	 AG	3608-3900	GT	CTG
-recovered Augustus_model.g40131.t1, initial, 2378, 2413
-recovered Augustus_model.g40131.t1, internal, 2743, 2759
-recovered Augustus_model.g40131.t1, internal, 3608, 3900

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3338, rend_intergenic: 1097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4996
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3338, rend_intergenic: 1097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support