-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_684

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60617-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60617-T1 727-887-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40128.t1
Couldn't classify 1435, 1488
Couldn't classify 4075, 4176
Sorry, prediction snap_scaffold_684-snap.1-T1 fails validation.
(AAA)	 AG	1435-1488	GT	AGG
(TTT)	 AG	3463-3596	GT	AGG
(ATG)	 AG	4075-4176	GT	AGG
-recovered snap_scaffold_684-snap.1-T1, initial, 4075, 4176
-recovered snap_scaffold_684-snap.1-T1, internal, 1435, 1488
-recovered snap_scaffold_684-snap.1-T1, internal, 3463, 3596
-recovered snap_scaffold_684-snap.1-T1, internal, 4075, 4176

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5000
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support