-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_683

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2066, 2509
Sorry, prediction snap_scaffold_683-snap.2-T1 fails validation.
(ATG)	 AG	1005-1118	GT	GTG
(CTG)	 AG	1508-1699	GT	AGG
(GTG)	 AG	2066-2509	GT	GAG
-recovered snap_scaffold_683-snap.2-T1, initial, 1005, 1118
-recovered snap_scaffold_683-snap.2-T1, internal, 1005, 1118
-recovered snap_scaffold_683-snap.2-T1, internal, 1508, 1699
-recovered snap_scaffold_683-snap.2-T1, internal, 2066, 2509
Couldn't classify 368, 523
Sorry, prediction Augustus_model.g40127.t1 fails validation.
(TCC)	 AG	368-523	GT	AGG
(TGC)	 AG	1491-1699	GT	AGG
(GTG)	 AG	2066-2509	GT	GAG
(GGC)	 AG	3091-3156	TG	AGT
-recovered Augustus_model.g40127.t1, terminal, 3091, 3156
-recovered Augustus_model.g40127.t1, internal, 368, 523
-recovered Augustus_model.g40127.t1, internal, 1491, 1699
-recovered Augustus_model.g40127.t1, internal, 2066, 2509
Couldn't classify 2066, 2509
Sorry, prediction GlimmerHMM_glimmerT_60616-T1 fails validation.
(ATG)	 TT	31-523	GT	AGG
(TGC)	 AG	1491-1699	GT	AGG
(GTG)	 AG	2066-2509	GT	GAG
-recovered GlimmerHMM_glimmerT_60616-T1, initial, 31, 523
-recovered GlimmerHMM_glimmerT_60616-T1, internal, 1491, 1699
-recovered GlimmerHMM_glimmerT_60616-T1, internal, 2066, 2509

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_683-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4208, rend_intergenic: 1005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5000
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4208, rend_intergenic: 1005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support