-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_682

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60615-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60615-T1 3547-3707-terminal-1 is invalid.
Couldn't classify 4413, 4607
Sorry, prediction snap_scaffold_682-snap.1-T1 fails validation.
(ATG)	 AA	3831-3852	GT	AGG
(TTA)	 AG	4413-4607	GT	AGG
-recovered snap_scaffold_682-snap.1-T1, initial, 3831, 3852
-recovered snap_scaffold_682-snap.1-T1, internal, 4413, 4607

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5000
-exon list size: 3


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support