-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_681

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40126.t1
Couldn't classify 138, 322
Couldn't classify 2720, 2766
Sorry, prediction snap_scaffold_681-snap.1-T1 fails validation.
(TCC)	 AG	138-322	GT	ATG
(CCC)	 AG	636-792	GT	CAG
(GGC)	 AG	1048-1340	GT	AGG
(GTC)	 AG	2720-2766	GT	TGG
-recovered snap_scaffold_681-snap.1-T1, internal, 138, 322
-recovered snap_scaffold_681-snap.1-T1, internal, 636, 792
-recovered snap_scaffold_681-snap.1-T1, internal, 1048, 1340
-recovered snap_scaffold_681-snap.1-T1, internal, 2720, 2766
Valid prediction for GlimmerHMM_glimmerT_60613-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60614-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5000
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support