-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_68

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39541.t1
Valid prediction for Augustus_model.g39538.t1
Valid prediction for snap_scaffold_68-snap.7-T1
Valid prediction for snap_scaffold_68-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59669-T1
Valid prediction for GlimmerHMM_glimmerT_59670-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59672-T1
Valid prediction for GlimmerHMM_glimmerT_59671-T1
Valid prediction for Augustus_model.g39539.t1
Valid prediction for snap_scaffold_68-snap.5-T1
Valid prediction for snap_scaffold_68-snap.2-T1
Couldn't classify 24024, 24091
Sorry, prediction Augustus_model.g39536.t1 fails validation.
(ATG)	 AT	19515-19523	GT	CGG
(ATG)	 AG	22361-22508	GT	TGG
(AGC)	 AG	23000-23119	GT	AGG
(GAA)	 AG	24024-24091	GT	GGG
-recovered Augustus_model.g39536.t1, initial, 19515, 19523
-recovered Augustus_model.g39536.t1, initial, 22361, 22508
-recovered Augustus_model.g39536.t1, internal, 22361, 22508
-recovered Augustus_model.g39536.t1, internal, 23000, 23119
-recovered Augustus_model.g39536.t1, internal, 24024, 24091
Valid prediction for GlimmerHMM_glimmerT_59673-T1
Couldn't classify 24024, 24073
Sorry, prediction pasa_asmbl_49516.p1 fails validation.
(ATG)	 AT	19515-19523	GT	CGG
(ATG)	 AG	22361-22508	GT	TGG
(AGC)	 AG	23000-23119	GT	AGG
(GAA)	 AG	24024-24073	GA	GAG
-recovered pasa_asmbl_49516.p1, initial, 19515, 19523
-recovered pasa_asmbl_49516.p1, initial, 22361, 22508
-recovered pasa_asmbl_49516.p1, internal, 22361, 22508
-recovered pasa_asmbl_49516.p1, internal, 23000, 23119
Valid prediction for snap_scaffold_68-snap.6-T1
Valid prediction for Augustus_model.g39540.t1
Valid prediction for GlimmerHMM_glimmerT_59667-T1
Valid prediction for GlimmerHMM_glimmerT_59668-T1
Valid prediction for snap_scaffold_68-snap.1-T1
Couldn't classify 16268, 16894
Sorry, prediction pasa_asmbl_49517.p1 fails validation.
(AGA)	 CG	16268-16894	TT	AAT
Valid prediction for snap_scaffold_68-snap.4-T1
Valid prediction for Augustus_model.g39537.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 25000
-exon list size: 65


building trellis

1.5    
3.0    
4.5    
6.0    
7.5    
9.0    
10.4    
11.9    
13.4    
14.9    
16.4    
17.9    
19.4    
20.9    
22.4    
23.9    
25.4    
26.9    
28.4    
29.9    
31.3    
32.8    
34.3    
35.8    
37.3    
38.8    
40.3    
41.8    
43.3    
44.8    
46.3    
47.8    
49.3    
50.7    
52.2    
53.7    
55.2    
56.7    
58.2    
59.7    
61.2    
62.7    
64.2    
65.7    
67.2    
68.7    
70.1    
71.6    
73.1    
74.6    
76.1    
77.6    
79.1    
80.6    
82.1    
83.6    
85.1    
86.6    
88.1    
89.6    
91.0    
92.5    
94.0    
95.5    
97.0    
98.5    
-found 8 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support