-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_679

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40125.t1
Couldn't classify 4348, 4466
Sorry, prediction GlimmerHMM_glimmerT_60611-T1 fails validation.
(ATG)	 CC	1983-2107	GT	CAG
(TGG)	 AG	4158-4224	GT	AGG
(AGA)	 AG	4348-4466	GT	AGG
-recovered GlimmerHMM_glimmerT_60611-T1, initial, 1983, 2107
-recovered GlimmerHMM_glimmerT_60611-T1, internal, 4158, 4224
-recovered GlimmerHMM_glimmerT_60611-T1, internal, 4348, 4466
Couldn't classify 4769, 4826
Sorry, prediction snap_scaffold_679-snap.1-T1 fails validation.
(ATG)	 CG	4024-4050	GT	GGG
(GCC)	 AG	4141-4224	GT	AGG
(AGA)	 AG	4348-4466	GT	AGG
(ATT)	 AG	4564-4612	GT	TGG
(ACA)	 AG	4769-4826	GT	TGG
-recovered snap_scaffold_679-snap.1-T1, initial, 4024, 4050
-recovered snap_scaffold_679-snap.1-T1, internal, 4141, 4224
-recovered snap_scaffold_679-snap.1-T1, internal, 4348, 4466
-recovered snap_scaffold_679-snap.1-T1, internal, 4564, 4612
-recovered snap_scaffold_679-snap.1-T1, internal, 4769, 4826

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5004
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support