-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_673

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60606-T1
Valid prediction for Augustus_model.g40124.t1
Couldn't classify 883, 1025
Sorry, prediction snap_scaffold_673-snap.2-T1 fails validation.
(TCA)	 AG	883-1025	GT	AAG
(AAA)	 AG	1452-1541	GT	AAG
(TTC)	 AG	1847-1910	GT	GGG
(TCC)	 AG	2582-2593	GA	GAG
-recovered snap_scaffold_673-snap.2-T1, terminal, 2582, 2593
-recovered snap_scaffold_673-snap.2-T1, internal, 883, 1025
-recovered snap_scaffold_673-snap.2-T1, internal, 1452, 1541
-recovered snap_scaffold_673-snap.2-T1, internal, 1847, 1910
Couldn't classify 4358, 4488
Sorry, prediction snap_scaffold_673-snap.1-T1 fails validation.
(ATG)	 AC	2906-3162	GT	TGG
(GCT)	 AG	4358-4488	GT	ATG
-recovered snap_scaffold_673-snap.1-T1, initial, 2906, 3162
-recovered snap_scaffold_673-snap.1-T1, internal, 4358, 4488

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5027
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support