-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_670

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40122.t1
Valid prediction for snap_scaffold_670-snap.2-T1
Valid prediction for snap_scaffold_670-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40121.t1
Couldn't classify 345, 802
Sorry, prediction GlimmerHMM_glimmerT_60604-T1 fails validation.
(GCA)	 AG	345-802	GT	GGG
(CTG)	 AG	2642-2787	GT	CGG
(CTC)	 AG	3036-3301	AT	GAA
-recovered GlimmerHMM_glimmerT_60604-T1, terminal, 3036, 3301
-recovered GlimmerHMM_glimmerT_60604-T1, internal, 345, 802
-recovered GlimmerHMM_glimmerT_60604-T1, internal, 2642, 2787
Valid prediction for Augustus_model.g40120.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5035
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support