-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_661

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4476, 4685
Sorry, prediction Augustus_model.g40116.t1 fails validation.
(ATG)	 TC	1037-1048	GT	AGG
(GTT)	 AG	2082-2174	GT	CAG
(ATT)	 AG	3299-3466	GT	AGG
(GTG)	 AG	4476-4685	GT	GGG
-recovered Augustus_model.g40116.t1, initial, 1037, 1048
-recovered Augustus_model.g40116.t1, internal, 2082, 2174
-recovered Augustus_model.g40116.t1, internal, 3299, 3466
-recovered Augustus_model.g40116.t1, internal, 4476, 4685
Couldn't classify 4476, 4643
Sorry, prediction GlimmerHMM_glimmerT_60598-T1 fails validation.
(ATG)	 TC	1037-1048	GT	AGG
(GTT)	 AG	2082-2174	GT	CAG
(ATT)	 AG	3299-3466	GT	AGG
(GTG)	 AG	4476-4643	GT	AGG
-recovered GlimmerHMM_glimmerT_60598-T1, initial, 1037, 1048
-recovered GlimmerHMM_glimmerT_60598-T1, internal, 2082, 2174
-recovered GlimmerHMM_glimmerT_60598-T1, internal, 3299, 3466
-recovered GlimmerHMM_glimmerT_60598-T1, internal, 4476, 4643
Couldn't classify 4476, 4753
Sorry, prediction snap_scaffold_661-snap.3-T1 fails validation.
(ATG)	 TC	1037-1048	GT	AGG
(GTT)	 AG	2082-2174	GT	CAG
(ATT)	 AG	3299-3466	GT	AGG
(GTG)	 AG	4476-4753	GT	ATG
-recovered snap_scaffold_661-snap.3-T1, initial, 1037, 1048
-recovered snap_scaffold_661-snap.3-T1, internal, 2082, 2174
-recovered snap_scaffold_661-snap.3-T1, internal, 3299, 3466
-recovered snap_scaffold_661-snap.3-T1, internal, 4476, 4753
Couldn't classify 47, 426
Sorry, prediction snap_scaffold_661-snap.2-T1 fails validation.
(GCT)	 AG	47-426	GT	AGG
(GAC)	 AG	885-995	AG	GAA
-recovered snap_scaffold_661-snap.2-T1, terminal, 885, 995
-recovered snap_scaffold_661-snap.2-T1, internal, 47, 426
Couldn't classify 2082, 2174
Couldn't classify 4476, 4643
Sorry, prediction pasa_asmbl_49509.p1 fails validation.
(GTT)	 AG	2082-2174	GT	CAG
(ATT)	 AG	3299-3466	GT	AGG
(GTG)	 AG	4476-4643	GT	AGG
-recovered pasa_asmbl_49509.p1, internal, 2082, 2174
-recovered pasa_asmbl_49509.p1, internal, 3299, 3466
-recovered pasa_asmbl_49509.p1, internal, 4476, 4643
Valid prediction for Augustus_model.g40115.t1
Valid prediction for GlimmerHMM_glimmerT_60597-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 354, 553
Couldn't classify 4788, 5067
Sorry, prediction snap_scaffold_661-snap.1-T1 fails validation.
(AGC)	 AG	354-553	GT	TGG
(ACA)	 AG	2916-3112	GT	GAG
(AGC)	 AG	4123-4197	GT	GAG
(CTG)	 AG	4788-5067	GT	GGG
-recovered snap_scaffold_661-snap.1-T1, internal, 354, 553
-recovered snap_scaffold_661-snap.1-T1, internal, 2916, 3112
-recovered snap_scaffold_661-snap.1-T1, internal, 4123, 4197
-recovered snap_scaffold_661-snap.1-T1, internal, 4788, 5067

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4731, rend_intergenic: 47  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5084
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4731, rend_intergenic: 47  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support